Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1338X
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36480.1 68417.m05180 aminotransferase class I and II family ...   103   9e-23
At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id...    46   1e-05
At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative...    46   1e-05
At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative...    29   1.7  
At3g46920.1 68416.m05092 protein kinase family protein similar t...    27   5.3  
At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive eff...    27   9.3  
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote...    27   9.3  
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si...    27   9.3  
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    27   9.3  
At2g25440.1 68415.m03047 leucine-rich repeat family protein cont...    27   9.3  
At1g73470.2 68414.m08506 expressed protein                             27   9.3  
At1g73470.1 68414.m08505 expressed protein                             27   9.3  
At1g10880.1 68414.m01250 expressed protein contains Pfam profile...    27   9.3  

>At4g36480.1 68417.m05180 aminotransferase class I and II family
           protein similar to Serine palmitoyltransferase 1 (EC
           2.3.1.50) from Homo sapiens [SP|O15269], Mus musculus
           [SP|O35704], Cricetulus griseus [SP|O54695]
          Length = 482

 Score =  103 bits (246), Expect = 9e-23
 Identities = 44/80 (55%), Positives = 60/80 (75%)
 Frame = +2

Query: 257 LNFGSTSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVEE 436
           +NF S ++L L  +E +++S   A+EKYGVGSCGPRGFYGTIDVHL+ E R++KFL   +
Sbjct: 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPD 171

Query: 437 TCVYSYGFSTIASAIPSYAK 496
           + +YSYG ST+ S IP + K
Sbjct: 172 SILYSYGLSTMFSTIPCFCK 191


>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
           identical to serine palmitoyltransferase [Arabidopsis
           thaliana] GI:9309380; similar to serine
           palmitoyltransferase from Solanum tuberosum
           [GI:4995890], Homo sapiens [SP|O15270], Mus musculus
           [SP|P97363]; contains Pfam profile PF00155:
           aminotransferase, classes I and II
          Length = 489

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 257 LNFGSTSFLSLDK-NETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVE 433
           LN GS ++L     +E      +++++K+   +C  R   GT  VH ELEE + +F+   
Sbjct: 103 LNLGSYNYLGFGSFDEYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEECVTRFVGKP 162

Query: 434 ETCVYSYGFSTIASAIP 484
              V+  G++T ++ IP
Sbjct: 163 AAVVFGMGYATNSAIIP 179


>At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 489

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +2

Query: 257 LNFGSTSFLSLDK-NETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVE 433
           LN GS ++L     +E      +++++K+   +C  R   GT  VH ELE+ +AK++   
Sbjct: 103 LNLGSYNYLGFGSFDEYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEDCVAKYVGQP 162

Query: 434 ETCVYSYGFSTIASAIP 484
              ++  G++T ++ IP
Sbjct: 163 AAVIFGMGYATNSAIIP 179


>At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 350

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 374 GTIDVHLELEERLAKFLEVEETCVYSYGFSTIASAI 481
           GT  VH ELEE +AKF+      V+  G+ T ++ I
Sbjct: 7   GTTAVHGELEECVAKFVGKPAAVVFGMGYLTNSAII 42


>At3g46920.1 68416.m05092 protein kinase family protein similar to
           MAP3K delta-1 protein kinase [Arabidopsis thaliana]
           GI:2253010; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 1171

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 257 LNFGSTSFLSLDKNETIIDSALKAMEKYGVGSCG 358
           LNFG +   SLD+ + I DS L+ + + G G+ G
Sbjct: 867 LNFGYSGSDSLDQLQIIKDSDLEELRELGSGTFG 900


>At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 638

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 269 STSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYG-TIDVHLELEER 409
           STSF SL K      S+L+ M K   GS   + FY  +I+  L + E+
Sbjct: 61  STSFKSLSKAHLFEISSLETMTKESSGSLSNKLFYDMSINDALSIREK 108


>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
           kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
           PIR:T10515
          Length = 1249

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 221 GTSNNGNIK*KFLNFGSTSFLSLDKNE 301
           G S NG+I  +  N G+ + L+LDKN+
Sbjct: 704 GNSLNGSIPQEIGNLGALNVLNLDKNQ 730


>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
           similar to plant adhesion molecule 1 [Arabidopsis
           thaliana] GI:3511223; contains Pfam profile PF00566: TBC
           domain
          Length = 400

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 74  DLGYCLASSFYHNLLLMVKKTNE 142
           D+GYC   ++   LLL+V KT E
Sbjct: 198 DVGYCQGLNYVAALLLLVMKTEE 220


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 320 LKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVEETCVYS 451
           LK  EKYG   CG  G Y T+ +   L    +  L+  +  ++S
Sbjct: 187 LKLKEKYGSNVCGEGGEYETLTLDCPLFTNASIVLDEYQVVLHS 230


>At2g25440.1 68415.m03047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to NL0E
           [Lycopersicon esculentum] gi|4235643|gb|AAD13303
          Length = 671

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 236 GNIK*KFLNFGSTSFLSLDKN--ETIIDSALKAMEKYGVGSCGPRGFYGTI 382
           G +    LN  S  FLS+D N  +      LKA+ K  V +     FYG I
Sbjct: 355 GKLPRSLLNCSSLEFLSVDNNRIKDTFPFWLKALPKLQVLTLSSNKFYGPI 405


>At1g73470.2 68414.m08506 expressed protein
          Length = 248

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 YHNLLLMVKKTNEVPCSSQ 160
           Y N+LL V+    +PCSSQ
Sbjct: 38  YRNVLLAVRNNLNIPCSSQ 56


>At1g73470.1 68414.m08505 expressed protein
          Length = 351

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 YHNLLLMVKKTNEVPCSSQ 160
           Y N+LL V+    +PCSSQ
Sbjct: 141 YRNVLLAVRNNLNIPCSSQ 159


>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 651

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 347 GSCGPRGFYGTIDVHLELEERLAKFLEVEETCVYSYGFSTI 469
           G C        +  H  LE   A+F+ + ETC+  + F+TI
Sbjct: 179 GKCSMMDAEKRLISHALLEPSNARFVLLSETCIPLFNFTTI 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,016
Number of Sequences: 28952
Number of extensions: 238886
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)