Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    41   0.037
UniRef50_P76072 Cluster: Side tail fiber protein homolog from la...    35   1.9  
UniRef50_P09975 Cluster: Protein ycf2; n=2; cellular organisms|R...    33   5.7  
UniRef50_A2C8G0 Cluster: Possible Sema domain; n=2; Prochlorococ...    33   7.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.7 bits (91), Expect = 0.037
 Identities = 22/38 (57%), Positives = 24/38 (63%)
 Frame = +3

Query: 75  PLSFVLYLLIGSRFRSSCRFCEALLLLGLVFTPSRRPS 188
           P+ F+      SRFRS  RFCEALLLLGLV   S R S
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLS 111


>UniRef50_P76072 Cluster: Side tail fiber protein homolog from
           lambdoid prophage Rac; n=4; Escherichia coli|Rep: Side
           tail fiber protein homolog from lambdoid prophage Rac -
           Escherichia coli (strain K12)
          Length = 1120

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 377 CMTLQMQNHYFKTRLDFNGSKDFYSVKQELSEFFASKRL 261
           C TLQM+ HY    L +  S+D Y  +++ +E + SK L
Sbjct: 861 CRTLQMKAHYRNGGLFYRSSRDGYGFEEDWAEVYTSKNL 899


>UniRef50_P09975 Cluster: Protein ycf2; n=2; cellular organisms|Rep:
           Protein ycf2 - Marchantia polymorpha (Liverwort)
          Length = 2136

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -2

Query: 719 NYVLSRNHNTFTFSFLLYSMLRIQFLLLLTTKAYISRHLNIVLTTVKFLI--IITKFNRK 546
           NY +  N+  F  SFL+YS +  QF+L    K   S + N+V    K +I  + +K N K
Sbjct: 436 NYYI--NNKPFLKSFLIYSSISNQFILFFKQKNSKSFNKNLVKKNSKDVITNVFSKEN-K 492

Query: 545 ISLNHFYDS 519
           I +N+F  S
Sbjct: 493 IEINNFSKS 501


>UniRef50_A2C8G0 Cluster: Possible Sema domain; n=2; Prochlorococcus
           marinus|Rep: Possible Sema domain - Prochlorococcus
           marinus (strain MIT 9303)
          Length = 174

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 193 SQLGLREGVNTSPNKSNASQNLQLDRNRDPMRRYRTKLSGLWNKI 59
           + L L +G+ + PNK  A Q + L RN DP++  + +L  L  +I
Sbjct: 7   NHLRLIQGIFSRPNKVVALQRIDLSRNADPVQSLQARLETLERQI 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,058,970
Number of Sequences: 1657284
Number of extensions: 10067805
Number of successful extensions: 22889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22885
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)