Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.0  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   3.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   3.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.4  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 48  CLYCILFHSPLSFVLYLLIGSRFRSSCRFC 137
           C   +  +S ++ +LY L+ S+FR+    C
Sbjct: 336 CRIMVYLNSAINPILYNLMSSKFRTGFIIC 365


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 106 GRDSDPVVDSVKHCSC 153
           GR   P V+++KH SC
Sbjct: 342 GRKVSPRVNTIKHTSC 357


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 106 GRDSDPVVDSVKHCSC 153
           GR   P V+++KH SC
Sbjct: 342 GRKVSPRVNTIKHTSC 357


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 185 EL*KKNPMSNLNNNIKKATLNKI*LLV 265
           EL +K   ++LN+N  +ATLN +  L+
Sbjct: 580 ELARKAAFAHLNSNEARATLNWVSKLI 606


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,667
Number of Sequences: 336
Number of extensions: 2960
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)