Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076...    28   6.9  

>12_02_0966 -
           24906361-24906958,24907084-24907250,24907403-24907650,
           24907824-24908001,24908196-24908372,24908459-24908563,
           24908633-24908770,24909757-24910836
          Length = 896

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 172 GVNTSPNKSNASQNLQLDRNR-DPMRRYRTKLSGLWNKIQYKQIAILNPNISFG 14
           G   SP +    Q  Q   ++  P   +  K+SG W K  +K   I++PN++ G
Sbjct: 323 GTKLSPEELVMLQGCQCPPSKLRPGFYWYDKVSGFWGKEGHKPHCIISPNLNVG 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,856
Number of Sequences: 37544
Number of extensions: 226155
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)