Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.19 
SB_26188| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_7730| Best HMM Match : SUA5 (HMM E-Value=1.6)                       29   4.0  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  

>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = -2

Query: 719 NYVLSRNHNTFTFSFLLYSMLRIQFLLLLTTKAYISRHLNIVLTTVKFLIIIT 561
           NY+   NHN+      +  ++ I  + ++T   YI+ + NI++TT+  +IIIT
Sbjct: 34  NYI---NHNSNIIIITIIDVIIITIINIITIINYINHNSNIIITTIIDIIIIT 83


>SB_26188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 187 LGLREGVNTSPNKSNASQNLQLDRNRDPMRRYRTKLSGLWNKIQYKQ 47
           L + E +    N  N ++NL+L+R+  P R +  K +  +NKI +++
Sbjct: 24  LKMLEDLQELENSGNVAKNLELERHFKPHRSFLEKSTEKFNKIIHRK 70


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 187 LGLREGVNTSPNKSNASQNLQLDRNRDPMRRYRTKLSGLWNKIQYKQ 47
           L + E +    N  N ++NL+L+R+  P R +  K +  +NKI +++
Sbjct: 24  LKMLEDLQELENSGNVAKNLELERHFKPHRSFLEKSTEKFNKIIHRK 70


>SB_7730| Best HMM Match : SUA5 (HMM E-Value=1.6)
          Length = 325

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 380 ICMTLQMQNHYFKTRLDFNGSKDFYSVKQELSEFF 276
           +C T   QN +F       GS  FY  K+E+ + F
Sbjct: 161 LCKTKFFQNSFFNRIPKVKGSSSFYFTKREIEDLF 195


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 160  SPNKSNASQNLQLDRNRDPMRRYRTKLSGL 71
            S N +NASQ   LD N  P  RY+ K+  L
Sbjct: 1215 STNNTNASQYQYLDTNLSPYTRYQYKVRAL 1244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,049,246
Number of Sequences: 59808
Number of extensions: 313335
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)