Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022600-1|AAY55016.1|  540|Drosophila melanogaster IP11950p pro...    30   3.9  
BT022464-1|AAY54880.1|  487|Drosophila melanogaster IP11750p pro...    30   3.9  
AE014297-3087|AAF55948.1|  547|Drosophila melanogaster CG13409-P...    30   3.9  

>BT022600-1|AAY55016.1|  540|Drosophila melanogaster IP11950p
           protein.
          Length = 540

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 719 NYVLSRNHNTFTFSFLLYSMLRIQFLLLLTTKAYIS-RHLNIVLTTVKFLIIITKFNRKI 543
           ++V ++N+N F   F +   + + +L+LL  +AY   R +      +KFL ++  F   I
Sbjct: 374 HFVDTKNYNGFKMFFYIACCMYVLYLVLLLLRAYTELRSMPYFDMRLKFLTLLMLFVLSI 433

Query: 542 SL 537
           S+
Sbjct: 434 SI 435


>BT022464-1|AAY54880.1|  487|Drosophila melanogaster IP11750p
           protein.
          Length = 487

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 719 NYVLSRNHNTFTFSFLLYSMLRIQFLLLLTTKAYIS-RHLNIVLTTVKFLIIITKFNRKI 543
           ++V ++N+N F   F +   + + +L+LL  +AY   R +      +KFL ++  F   I
Sbjct: 321 HFVDTKNYNGFKMFFYIACCMYVLYLVLLLLRAYTELRSMPYFDMRLKFLTLLMLFVLSI 380

Query: 542 SL 537
           S+
Sbjct: 381 SI 382


>AE014297-3087|AAF55948.1|  547|Drosophila melanogaster CG13409-PA
           protein.
          Length = 547

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 719 NYVLSRNHNTFTFSFLLYSMLRIQFLLLLTTKAYIS-RHLNIVLTTVKFLIIITKFNRKI 543
           ++V ++N+N F   F +   + + +L+LL  +AY   R +      +KFL ++  F   I
Sbjct: 381 HFVDTKNYNGFKMFFYIACCMYVLYLVLLLLRAYTELRSMPYFDMRLKFLTLLMLFVLSI 440

Query: 542 SL 537
           S+
Sbjct: 441 SI 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,849,358
Number of Sequences: 53049
Number of extensions: 429004
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)