Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    31   0.87 
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    31   0.87 
U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical protein
            F59A3.2a protein.
          Length = 975

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 211  THWIFFSQLGLREGVNTSPNKSNASQNLQLDRNRDPMRRYRTKLS 77
            T W     + LR+ +  S N+ +    LQ + N DP+ + R +LS
Sbjct: 921  TEWYMMRGVQLRDEIPASSNQDSKLTQLQKNNNNDPISQQRPQLS 965


>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 562 VIIIRNLTVVNTIFKC-RLIYALVVSNSKNCILNIEYKRNENVNVL 696
           +I+ R++  VNTI +C +L+  L V   K+CILN     N   +V+
Sbjct: 268 LIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVI 313


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 562 VIIIRNLTVVNTIFKC-RLIYALVVSNSKNCILNIEYKRNENVNVL 696
           +I+ R++  VNTI +C +L+  L V   K+CILN     N   +V+
Sbjct: 335 LIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVI 380


>U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical
           protein F39B3.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 39  IAICLYCILFHSPLSFVLYLLIGSRFRSSCRFCEALLLLG 158
           + I  + I+ +   +F ++ + G RFR SCR C    L+G
Sbjct: 315 VDISNFLIVLNCSSNFWVFFVWGKRFRRSCRKCIKSTLIG 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,193
Number of Sequences: 27780
Number of extensions: 253693
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)