Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.3  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 583 TVVNTIFKCRLIYALVVSNSKNCILNIEYKRNENVNVL 696
           T+ + +  CR +YA+ V+N++  +L      +E  N+L
Sbjct: 455 TIEDLLHFCRQMYAMKVNNAEYALLTAIVIFSERPNLL 492


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 190 QLGLREGVNT-SPNKSNASQNLQLDRNRD 107
           Q G R+  N  + N+ N +QN Q D NR+
Sbjct: 505 QNGNRQNDNKRNGNRQNDNQNNQNDNNRN 533


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 495 YILFSRFSRVVEVIQAYFTIE 557
           ++LF  FS+  EV+QA+  ++
Sbjct: 148 HLLFRHFSQRQEVLQAFKQVQ 168


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 731 NHN*NYVLSRNHNTFTFSFLLYSMLRIQ 648
           N+N NY    N+N   +  L Y+++ I+
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLYYNIINIE 360


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 495 YILFSRFSRVVEVIQAYFTIE 557
           ++LF  FS+  EV+QA+  ++
Sbjct: 116 HLLFRHFSQRQEVLQAFKQVQ 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,418
Number of Sequences: 438
Number of extensions: 3315
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)