Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1333
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    31   1.1  
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            31   1.1  
At2g22730.1 68415.m02694 transporter-related low similarity to s...    28   7.6  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 513 FSRVVEVIQAYFTIEFRDYNKKFDGG 590
           FS+++E I+A F  ++ +Y KK+ GG
Sbjct: 205 FSKILEAIKANFNDKYEEYRKKWGGG 230


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 513 FSRVVEVIQAYFTIEFRDYNKKFDGG 590
           FS+++E I+A F  ++ +Y KK+ GG
Sbjct: 206 FSKILEAIKANFNDKYEEYRKKWGGG 231


>At2g22730.1 68415.m02694 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003974, GI:12003976, GI:12003972,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 510

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 611 RHLNIVLTTVKFLIIITKFNRKISLNHFYDSRKS 510
           R   ++LT++ FL     F  KI+LN FY + +S
Sbjct: 458 RKTTLILTSILFLAAAIWFIGKINLNSFYSNDES 491


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,091
Number of Sequences: 28952
Number of extensions: 214652
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)