Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1332
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)                      30   2.4  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)
          Length = 450

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +2

Query: 218 NNFSI-NSRHIYVQIIRSK*---FCNITIFSYNMFIINLLTVFCKLSETIPS 361
           +N+SI    H++  II++     +C I   +  +F    + VFC +S+TIPS
Sbjct: 246 DNYSIAKCFHLHQLIIQANDTFNYCRIRCIATRVFKTRFVLVFCSISKTIPS 297


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 176 TISLTCASITITATNNFSINS--RHIYVQIIRSK*FCNITIFSYNMFIINLLTV 331
           T+S+TC++  IT T  F ++S   H+Y  II      +  +F  N  II++ +V
Sbjct: 751 TVSITCSASCITCTATFHVSSVMCHLYSVIIH----VSSVMFHVNSVIIHVSSV 800


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,828
Number of Sequences: 59808
Number of extensions: 340998
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)