Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1332
         (769 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    24   5.9  
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    24   5.9  
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    24   5.9  
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    24   5.9  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.9  

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 DVCSSSLNIPTPHSFKQKWTISLTCASIT 205
           D+C  +L +P P        +SLT + +T
Sbjct: 105 DICFRTLKVPNPSYGDLNHLVSLTMSGVT 133


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 DVCSSSLNIPTPHSFKQKWTISLTCASIT 205
           D+C  +L +P P        +SLT + +T
Sbjct: 105 DICFRTLKVPNPSYGDLNHLVSLTMSGVT 133


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 DVCSSSLNIPTPHSFKQKWTISLTCASIT 205
           D+C  +L +P P        +SLT + +T
Sbjct: 105 DICFRTLKVPNPSYGDLNHLVSLTMSGVT 133


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 DVCSSSLNIPTPHSFKQKWTISLTCASIT 205
           D+C  +L +P P        +SLT + +T
Sbjct: 105 DICFRTLKVPNPSYGDLNHLVSLTMSGVT 133


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 505  CLHMID-MITCLVIVLYCVIVYN*ISINLEEYKLICLL*SIL 627
            C H  D M+T L  +  CV+V +  + +   Y+++ +L +IL
Sbjct: 2365 CYHDEDEMVTVLDCITLCVMVVSYSAESTRGYQMLIILEAIL 2406


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,988
Number of Sequences: 2352
Number of extensions: 11375
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)