Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1332
         (769 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071373-1|AAL48995.1|  422|Drosophila melanogaster RE40293p pro...    32   0.99 
AE014296-3268|AAN11645.1|  406|Drosophila melanogaster CG7668-PB...    32   0.99 
AE014296-3267|AAF49079.2|  422|Drosophila melanogaster CG7668-PA...    32   0.99 
AY071316-1|AAL48938.1|  717|Drosophila melanogaster RE33981p pro...    30   3.0  
AE013599-34|EAA46001.1|  717|Drosophila melanogaster CG12547-PA ...    30   3.0  
U36477-1|AAA91035.1|  664|Drosophila melanogaster neuron specifi...    29   5.3  

>AY071373-1|AAL48995.1|  422|Drosophila melanogaster RE40293p
           protein.
          Length = 422

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 668 IYKIMKIDIDSNVTNIDHNKHINLYSSKLMEIQLYTMTQYK 546
           I K+ +I  + NV N DH++ + L SSKL  I+L T+  ++
Sbjct: 205 IVKMTEILSEYNVNNKDHDEFVLLGSSKLPSIKLVTLPDFE 245


>AE014296-3268|AAN11645.1|  406|Drosophila melanogaster CG7668-PB,
           isoform B protein.
          Length = 406

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 668 IYKIMKIDIDSNVTNIDHNKHINLYSSKLMEIQLYTMTQYK 546
           I K+ +I  + NV N DH++ + L SSKL  I+L T+  ++
Sbjct: 189 IVKMTEILSEYNVNNKDHDEFVLLGSSKLPSIKLVTLPDFE 229


>AE014296-3267|AAF49079.2|  422|Drosophila melanogaster CG7668-PA,
           isoform A protein.
          Length = 422

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 668 IYKIMKIDIDSNVTNIDHNKHINLYSSKLMEIQLYTMTQYK 546
           I K+ +I  + NV N DH++ + L SSKL  I+L T+  ++
Sbjct: 205 IVKMTEILSEYNVNNKDHDEFVLLGSSKLPSIKLVTLPDFE 245


>AY071316-1|AAL48938.1|  717|Drosophila melanogaster RE33981p
           protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 167 QKWTISLTCASITITAT-NNFSINSRHIYVQIIRSK*FCNITIFSYNMFIINLLTVFCKL 343
           QKW +   C S+ +  T  N      H+ VQ  R    C  +      F++NL    C L
Sbjct: 629 QKWIVKTVCQSVIVNPTCGNLLDGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCL 688

Query: 344 SETI 355
            + I
Sbjct: 689 VKKI 692


>AE013599-34|EAA46001.1|  717|Drosophila melanogaster CG12547-PA
           protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 167 QKWTISLTCASITITAT-NNFSINSRHIYVQIIRSK*FCNITIFSYNMFIINLLTVFCKL 343
           QKW +   C S+ +  T  N      H+ VQ  R    C  +      F++NL    C L
Sbjct: 629 QKWIVKTVCQSVIVNPTCGNLLDGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCL 688

Query: 344 SETI 355
            + I
Sbjct: 689 VKKI 692


>U36477-1|AAA91035.1|  664|Drosophila melanogaster neuron specific
           zinc finger transcriptionfactor protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 113 VADVCSSSLNIPTPHSFKQKWTISLTCASITITATNNFSINSRHIYVQIIRSK*FCNITI 292
           VAD  +++  +PTP   K K+T S  C     T++N       H+  Q  +    C    
Sbjct: 447 VADPAAAASGVPTPDQQKTKYTCS-ECGKQYATSSNLSRHKQTHVDSQSAKKCHTCGKAY 505

Query: 293 FSYNMFIINLLT 328
            S     ++LLT
Sbjct: 506 VSMPALAMHLLT 517


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,065,045
Number of Sequences: 53049
Number of extensions: 481833
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)