Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1332
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016681-4|AAB66174.2|  276|Caenorhabditis elegans Hypothetical ...    31   0.90 
AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical...    29   4.8  
AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF016681-4|AAB66174.2|  276|Caenorhabditis elegans Hypothetical
           protein F22E5.8 protein.
          Length = 276

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 421 RLNRSEDALFKFSYHFLNSKSHFSLNVVCLHMIDMITC 534
           R+ R    LF F   +L+SK+H SL  +C+  ID I C
Sbjct: 204 RIIRDAKFLFLFFSSWLSSKNHCSLLDMCMIPIDCIVC 241


>AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical
           protein Y113G7B.18 protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +2

Query: 92  HRNCVCFVADVCSSSLNIPTPHSFKQKWTISLTCASITITATNNFSINSRHIYVQIIRSK 271
           HR  V  V+DV      I    + + +W   L C   T     N +     +Y+  +RS 
Sbjct: 525 HRALVTMVSDVAERVSRISLDPTVQYRW---LNCGRTTSRMMFNMTSKDFEMYIGTVRSV 581

Query: 272 *FCNIT 289
            F NI+
Sbjct: 582 FFANIS 587


>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 445 LFKFSYHF-LNSKSHFSLNVVCLHMIDMITCLVIVLYCVIVYN*ISINLEEY 597
           LF FS     N  S FSL  + L ++ +ITC++ V+  V  Y    + LE++
Sbjct: 85  LFGFSLDIDFNDASIFSLKSIFLMLLFLITCILYVISEVFNYLISILALEKF 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,906
Number of Sequences: 27780
Number of extensions: 274115
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)