Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1328
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    91   2e-19
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   4.4  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   5.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   7.6  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
 Frame = +3

Query: 498 SFQLGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILC 677
           +F  G++LREC+R+EAL +++L S DF+ FF  ++ S+FD+ASDAFSTFK +L  HK   
Sbjct: 136 AFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKSILLNHKSQV 195

Query: 678 AEFLEANYDKVFSHIND-F*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
           AEF+  ++D+ F               + S         +R N S+MTRYI++ +
Sbjct: 196 AEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAE 250



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 28/81 (34%), Positives = 47/81 (58%)
 Frame = +1

Query: 259 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 438
           EP  D+ V+ L+ ++Y             +++FE KKD   +F+ +LRR + +R PTV+Y
Sbjct: 57  EPDADL-VSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDY 115

Query: 439 ICTKPEILFTLMSGYEHQEIA 501
           +   P+I   L+S Y +QE+A
Sbjct: 116 MLAHPQIFPVLVSYYRYQEVA 136


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 365 FPSKSIRFKFCIKSSNKLVLYISCANCATMISVCGSAQMYHK 240
           F SK+++ K   K  +   L ISCA+   ++   G  Q Y K
Sbjct: 364 FSSKNVQSKEKSKIMSCFTLLISCAHITYLLDCHGIIQFYQK 405


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 26/90 (28%), Positives = 39/90 (43%)
 Frame = -2

Query: 389 LKTWATSFFPSKSIRFKFCIKSSNKLVLYISCANCATMISVCGSAQMYHKAYF*SVPNSC 210
           LKT      P+K     +C  S  +  LY    N A    +  S        F S+ N C
Sbjct: 680 LKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGN------FMSIIN-C 732

Query: 209 SRLLELFQLSYHPSLKPSRHLLTI*QLRRA 120
             L++L ++  HP+L   R ++T   LRR+
Sbjct: 733 --LMQLRKVCNHPNLHEERPIVTSFALRRS 760


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -3

Query: 247 TIKHIFNQYQILAHVFLS--FFSFLITPL*SR---HGIF*RSNNSAGLF*DLPKRGIVL 86
           +  ++ N  +  AHVFLS  FF F I  +      + IF  +  S+GL+ +LP    +L
Sbjct: 129 SFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTML 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,609
Number of Sequences: 5004
Number of extensions: 63365
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)