Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1328
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021... 96 3e-20
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622... 84 2e-16
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384... 77 2e-14
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 28 8.1
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 8.1
>07_03_1064 +
23700662-23700787,23701709-23701870,23701983-23702101,
23703128-23703202,23704387-23704480,23704856-23704915,
23705083-23705151,23705457-23705555,23706201-23706245,
23706339-23706441,23706665-23706723
Length = 336
Score = 96.3 bits (229), Expect = 3e-20
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
G+MLREC R++++A+ +L SD FF Y+++ FDIASDA +TFKELLTRHK AEFL
Sbjct: 147 GSMLRECIRHQSIARYVLESDHMKKFFDYIQLPNFDIASDASATFKELLTRHKATVAEFL 206
Query: 690 EANYDKVFSHINDF*I--RKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
NYD FS N + + + DR N ++M RY+++ D
Sbjct: 207 SKNYDWFFSEFNTRLLSSTNYITKRQAIKFLGDMLLDRSNSTVMMRYVSSKD 258
Score = 51.6 bits (118), Expect = 8e-07
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +1
Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
+EP T+ V QL QE + +++ E +KD QV N+ R+Q+ ++ E
Sbjct: 63 SEPVTEACV-QLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASE 121
Query: 436 YICTKPEILFTLMSGYEHQEIA 501
Y+ ++L TL+SGYE+ +IA
Sbjct: 122 YLEANKDLLDTLISGYENMDIA 143
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 122 PCGVVRSLKDAVTALER------GDKKAEKAQEDVSKNLVLIKNMLYG 247
P VVR ++ + L+ GD K E+ ++SKN+ +K++LYG
Sbjct: 12 PADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYG 59
>07_03_1492 +
26960876-26960986,26961910-26962074,26962153-26962271,
26962559-26962633,26963063-26963156,26963239-26963298,
26963474-26963539,26963622-26963720,26964027-26964035
Length = 265
Score = 83.8 bits (198), Expect = 2e-16
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
G MLREC +Y LAK +L S F FF+YVE+S FDIASDA +TFK+LLT+H+ +EFL
Sbjct: 143 GNMLRECIKYPTLAKYILESSSFELFFQYVELSNFDIASDALNTFKDLLTKHEAAVSEFL 202
Query: 690 EANYDKVF 713
++Y++ F
Sbjct: 203 CSHYEQFF 210
Score = 33.1 bits (72), Expect = 0.28
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = +1
Query: 280 VAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPEI 459
V Q+A E+ + +EG+KD+A ++ +LR+++ V+YI ++
Sbjct: 66 VLQIALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQYIENHFDL 125
Query: 460 LFTLMSGYEHQEIASNLARCCENVL 534
L L+ Y++ E+A N C N+L
Sbjct: 126 LDFLVVCYKNLEVALN----CGNML 146
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 122 PCGVVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYG 247
P +VRS+K+++ AL+ + KA EDV KN+ ++ L G
Sbjct: 16 PQELVRSIKESLLALDT--RTGAKALEDVEKNVSTLRQTLSG 55
>03_01_0512 -
3849275-3849333,3849429-3849531,3849610-3849654,
3849876-3849974,3850078-3850146,3850251-3850310,
3850540-3850633,3850875-3850949,3851101-3851219,
3851433-3851600,3852743-3852928
Length = 358
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +3
Query: 516 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEA 695
+LR+C R++ A+ +L S FF Y++ F+IASDAF TFKELLTRH+ AEF
Sbjct: 171 ILRDCIRHQVAARYVLESQHMKKFFDYIQYPDFNIASDAFKTFKELLTRHRSSAAEFFSN 230
Query: 696 NYDKVFSHINDF*I--RKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
NYD F N + + + D+ N + M RY+++ D
Sbjct: 231 NYDWFFPEFNSKLLSSSNYIIRRQATQLLGDILLDKSNTTAMVRYVSSKD 280
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 349 IDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTLMSGYEHQEIA 501
+D E +KDV QV N+LR+++ R +Y+ ++L LMSGY++ +IA
Sbjct: 115 MDLETQKDVTQVTANLLRQKVDYRMVASDYLEENQDLLDVLMSGYDNMDIA 165
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 585 FFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEANYDKVFSHIND--F*IRKLCNS 755
FFR+++ +A AFST EL+ K ++E VFS + D ++K C+S
Sbjct: 802 FFRHLDDPHHKVAQAAFSTLAELIPACKKPFESYVERILPYVFSRLIDPKELVKKPCSS 860
>02_04_0622 -
24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 585 FFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEANYDKVFSHIND 728
FFRY++ +A AFST +++ K ++E VFS + D
Sbjct: 761 FFRYLDDPHHKVAQAAFSTLADIIPACKKQFESYVERILPYVFSRLID 808
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,848
Number of Sequences: 37544
Number of extensions: 351289
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -