Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1328
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16724| Best HMM Match : HEAT (HMM E-Value=1.1)                     140   2e-33
SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)               35   0.094
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                29   6.2  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_16724| Best HMM Match : HEAT (HMM E-Value=1.1)
          Length = 197

 Score =  140 bits (338), Expect = 2e-33
 Identities = 70/119 (58%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = +3

Query: 486 TSRDSFQLGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRH 665
           T   +   G MLREC RYE LAKI+L  D FYNFF YVE+STFDIASDAF+TFKE LTRH
Sbjct: 4   TPEIALNCGMMLRECLRYELLAKIILLDDRFYNFFNYVEMSTFDIASDAFATFKENLTRH 63

Query: 666 KILCAEFLEANYDKVF-SHINDF*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
           KI+CAEFLE NYDK F S+            + S         DRHNFS+MTRYI+NP+
Sbjct: 64  KIMCAEFLEKNYDKFFNSYGKLLHSENYVTRRQSLKLLGELLLDRHNFSVMTRYISNPE 122


>SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)
          Length = 249

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = -2

Query: 332 IKSSNKLVLYISCANCATMISVCGSAQMYHKAYF*SVPNSCSRLLELFQLSY----HPSL 165
           + S  + V  +SC  C  + + C S Q +  A F S P  C    E F LS+    H  +
Sbjct: 130 VTSFKRAVNSMSCGKCDEVFTQCSSLQTHVCALFPSKPYQCGHCQENFALSHELRAHVVI 189

Query: 164 KPSRHLLTI*QLRRAFLRLTKERHSIKA 81
             SR         RAF  +T   + I+A
Sbjct: 190 HQSRKPFKCGYCSRAFSGVTTLTNHIRA 217


>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -2

Query: 341 KFCIKSSNKLVLYISCANCATMISVCGSAQMYHKAYF*SVPNSC 210
           K C+K            N A +  VCGS   Y+K Y     N+C
Sbjct: 569 KVCVKQVYDSGYLPLTVNYAVLSDVCGSGWRYYKGYCYKTSNTC 612


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 137 RSLKDAVTAL-ERGDKKAEKAQ-EDVSKNLVLIKNMLYGTSVQNHKQISLLHN 289
           + +  ++T L E+  +KA+    +DVSK ++++    YG S +N +++   HN
Sbjct: 273 KEITRSITRLTEKSQRKAKPQNCKDVSKEIIIVIVERYGLSKKNAEKLFTAHN 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,423,611
Number of Sequences: 59808
Number of extensions: 443601
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)