Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1328
         (840 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    25   3.8  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   8.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.7  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    23   8.7  

>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -2

Query: 128 RRAFLRLTKERHSIKATWAGDISNYVYIRLY-----FWINYCNFQYH 3
           RR  L        +K T A   + YV +R       +W+ +C+FQ+H
Sbjct: 672 RRGLLNRQFNLPPLKDTIAVPNNGYVVLRFRADNPGYWLFHCHFQFH 718


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -2

Query: 128 RRAFLRLTKERHSIKATWAGDISNYVYIRLY-----FWINYCNFQYH 3
           RR  L        +K T A   + YV +R       FW+ +C+F +H
Sbjct: 672 RRGLLHRQYNLPPLKDTIAVPNNGYVVLRFRADNPGFWLFHCHFLFH 718


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 107 TKERHSIKATWAGDISNYVYIRL 39
           T +RH  K T  GD+ NY+ IR+
Sbjct: 644 TLKRH-FKITTLGDVRNYLGIRI 665


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 77  WAGDISNYVYIRLYFWINYCNFQYH 3
           W+   S+Y + + Y+  NY N+  H
Sbjct: 129 WSYPHSHYSHNQYYYMQNYSNYSQH 153


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,762
Number of Sequences: 2352
Number of extensions: 14614
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)