Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1328
(840 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY128438-1|AAM75031.1| 339|Drosophila melanogaster LD09950p pro... 152 5e-37
AE014296-2775|AAF49432.1| 339|Drosophila melanogaster CG4083-PA... 152 5e-37
AB000402-1|BAA19098.1| 339|Drosophila melanogaster DMO25 protein. 152 5e-37
DQ228793-1|ABB54746.1| 1715|Drosophila melanogaster Dicer-2 prot... 31 2.0
BT011073-1|AAR82738.1| 1640|Drosophila melanogaster SD11113p pro... 31 2.0
AE013599-2513|AAF57830.2| 1722|Drosophila melanogaster CG6493-PA... 31 2.0
AB073024-1|BAB69959.1| 1722|Drosophila melanogaster double-stran... 31 2.0
DQ228797-1|ABB54750.1| 1715|Drosophila melanogaster Dicer-2 prot... 29 6.0
AF235935-1|AAF60313.1| 1203|Drosophila melanogaster sodium/hydro... 29 6.0
>AY128438-1|AAM75031.1| 339|Drosophila melanogaster LD09950p
protein.
Length = 339
Score = 152 bits (369), Expect = 5e-37
Identities = 75/112 (66%), Positives = 85/112 (75%), Gaps = 2/112 (1%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
GTMLRECARYEALAKIML+SD+F+ FFRYVEVSTFDIASDAFSTFKELLTRHK+LCAEFL
Sbjct: 143 GTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFL 202
Query: 690 EANYDKVFS-HIND-F*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
+ANYDK FS H + S DRHNF++MTRYI+ P+
Sbjct: 203 DANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISEPE 254
Score = 118 bits (283), Expect = 1e-26
Identities = 59/86 (68%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
AEP D +VAQL+QE+Y RIDFEGKK VA +FNNVLRRQIGTRSPTVE
Sbjct: 56 AEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVE 115
Query: 436 YICTKPEILFTLMSGYE--HQEIASN 507
YICTKPEILFTLM+GYE H EIA N
Sbjct: 116 YICTKPEILFTLMAGYEDAHPEIALN 141
Score = 69.3 bits (162), Expect = 6e-12
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +2
Query: 116 EKPCGVVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTS 253
+ P +V+SLK+A+ ALE GD+K EKAQEDVSKNLV IKNMLYG+S
Sbjct: 9 KSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNMLYGSS 54
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 93 MPLFGKSQKSPAELL 137
MPLFGKSQKSP EL+
Sbjct: 1 MPLFGKSQKSPVELV 15
>AE014296-2775|AAF49432.1| 339|Drosophila melanogaster CG4083-PA
protein.
Length = 339
Score = 152 bits (369), Expect = 5e-37
Identities = 75/112 (66%), Positives = 85/112 (75%), Gaps = 2/112 (1%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
GTMLRECARYEALAKIML+SD+F+ FFRYVEVSTFDIASDAFSTFKELLTRHK+LCAEFL
Sbjct: 143 GTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFL 202
Query: 690 EANYDKVFS-HIND-F*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
+ANYDK FS H + S DRHNF++MTRYI+ P+
Sbjct: 203 DANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISEPE 254
Score = 118 bits (283), Expect = 1e-26
Identities = 59/86 (68%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
AEP D +VAQL+QE+Y RIDFEGKK VA +FNNVLRRQIGTRSPTVE
Sbjct: 56 AEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVE 115
Query: 436 YICTKPEILFTLMSGYE--HQEIASN 507
YICTKPEILFTLM+GYE H EIA N
Sbjct: 116 YICTKPEILFTLMAGYEDAHPEIALN 141
Score = 69.3 bits (162), Expect = 6e-12
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +2
Query: 116 EKPCGVVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTS 253
+ P +V+SLK+A+ ALE GD+K EKAQEDVSKNLV IKNMLYG+S
Sbjct: 9 KSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNMLYGSS 54
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 93 MPLFGKSQKSPAELL 137
MPLFGKSQKSP EL+
Sbjct: 1 MPLFGKSQKSPVELV 15
>AB000402-1|BAA19098.1| 339|Drosophila melanogaster DMO25 protein.
Length = 339
Score = 152 bits (369), Expect = 5e-37
Identities = 75/112 (66%), Positives = 85/112 (75%), Gaps = 2/112 (1%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
GTMLRECARYEALAKIML+SD+F+ FFRYVEVSTFDIASDAFSTFKELLTRHK+LCAEFL
Sbjct: 143 GTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFL 202
Query: 690 EANYDKVFS-HIND-F*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
+ANYDK FS H + S DRHNF++MTRYI+ P+
Sbjct: 203 DANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISEPE 254
Score = 116 bits (280), Expect = 3e-26
Identities = 58/86 (67%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
AEP D +VAQL+QE+Y RIDFEGKK VA +FNN+LRRQIGTRSPTVE
Sbjct: 56 AEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNLLRRQIGTRSPTVE 115
Query: 436 YICTKPEILFTLMSGYE--HQEIASN 507
YICTKPEILFTLM+GYE H EIA N
Sbjct: 116 YICTKPEILFTLMAGYEDAHPEIALN 141
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/46 (67%), Positives = 39/46 (84%)
Frame = +2
Query: 116 EKPCGVVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTS 253
+ P +V+SLK+A+ ALE GD+K EKAQEDVSKNLV IKNML+G+S
Sbjct: 9 KSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNMLHGSS 54
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 93 MPLFGKSQKSPAELL 137
MPLFGKSQKSP EL+
Sbjct: 1 MPLFGKSQKSPVELV 15
>DQ228793-1|ABB54746.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 560 HYFSQSLISSTFSQHRAKLEAIS*CSYPDISVNNISGLVQMYSTVGDRV 414
HY+ + + TF R L+A++ SYP N I+G Q +GD +
Sbjct: 1426 HYYLEKNLGYTFKDRRYLLQALTHPSYP---TNRITGSYQELEFIGDAI 1471
>BT011073-1|AAR82738.1| 1640|Drosophila melanogaster SD11113p protein.
Length = 1640
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 560 HYFSQSLISSTFSQHRAKLEAIS*CSYPDISVNNISGLVQMYSTVGDRV 414
HY+ + + TF R L+A++ SYP N I+G Q +GD +
Sbjct: 1412 HYYLEKNLGYTFKDRRYLLQALTHPSYP---TNRITGSYQELEFIGDAI 1457
>AE013599-2513|AAF57830.2| 1722|Drosophila melanogaster CG6493-PA
protein.
Length = 1722
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 560 HYFSQSLISSTFSQHRAKLEAIS*CSYPDISVNNISGLVQMYSTVGDRV 414
HY+ + + TF R L+A++ SYP N I+G Q +GD +
Sbjct: 1433 HYYLEKNLGYTFKDRRYLLQALTHPSYP---TNRITGSYQELEFIGDAI 1478
>AB073024-1|BAB69959.1| 1722|Drosophila melanogaster
double-strand-specific ribonucleaseprotein.
Length = 1722
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 560 HYFSQSLISSTFSQHRAKLEAIS*CSYPDISVNNISGLVQMYSTVGDRV 414
HY+ + + TF R L+A++ SYP N I+G Q +GD +
Sbjct: 1433 HYYLEKNLGYTFKDRRYLLQALTHPSYP---TNRITGSYQELEFIGDAI 1478
>DQ228797-1|ABB54750.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 29.5 bits (63), Expect = 6.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 560 HYFSQSLISSTFSQHRAKLEAIS*CSYPDISVNNISGLVQMYSTVGDRV 414
H++ + + TF R L+A++ SYP N I+G Q +GD +
Sbjct: 1426 HFYLEKNLGYTFKDRRYLLQALTHPSYP---TNRITGSYQELEFIGDAI 1471
>AF235935-1|AAF60313.1| 1203|Drosophila melanogaster sodium/hydrogen
exchanger protein protein.
Length = 1203
Score = 29.5 bits (63), Expect = 6.0
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -2
Query: 227 SVPNSCSRLLELFQLSYHPSLKPSR----HLLTI*QLR--RAFLRLTKERHSIKATWAGD 66
++ N+CSR L++ +L Y+PS K H L +L+ R RL+ RH++ D
Sbjct: 705 NLDNTCSRNLDMAELDYNPSKKDLTDARIHHLLAEELKPYRRHRRLSYSRHAVDDR---D 761
Query: 65 ISNYVYIRLYFWINY 21
+S V + +N+
Sbjct: 762 LSTQVQVNYKMQMNF 776
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,088,102
Number of Sequences: 53049
Number of extensions: 621918
Number of successful extensions: 1262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -