Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1328
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 119 3e-27
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 119 3e-27
Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical pr... 109 2e-24
AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. 29 3.1
AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhyd... 29 3.1
Z93385-9|CAB07642.1| 843|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 28 9.5
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 28 9.5
>U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical
protein R02E12.2b protein.
Length = 377
Score = 119 bits (286), Expect = 3e-27
Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
G MLRE R++ LAKI+LYSD FY FF YV+ FDI+SDAFSTFKEL TRHK + AEFL
Sbjct: 157 GLMLRESIRHDHLAKIILYSDVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKAIIAEFL 216
Query: 690 EANYDKVFS-HINDF*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
++NYD F+ + N + + S DRHNF+ MT+YI+NPD
Sbjct: 217 DSNYDTFFAQYQNLLNSKNYVTRRQSLKLLGELLLDRHNFNTMTKYISNPD 267
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 AEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPT 429
AEP ++ +V AQLAQE+Y + +FE KKDV Q+FNN+LRRQIGTRSPT
Sbjct: 70 AEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLRRQIGTRSPT 129
Query: 430 VEYICTKPEILFTLMSGYEHQEIA 501
VEY+ +PEIL L+ GY +IA
Sbjct: 130 VEYLGARPEILIQLVQGYSVPDIA 153
Score = 35.5 bits (78), Expect = 0.047
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 13/57 (22%)
Frame = +2
Query: 116 EKPCGVVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLIKNMLYG 247
+ P VV++L++ +T L++ DKK +KA ++VSKN+ +IK+ +YG
Sbjct: 10 KSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMIKSFIYG 66
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical
protein R02E12.2a protein.
Length = 636
Score = 119 bits (286), Expect = 3e-27
Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
G MLRE R++ LAKI+LYSD FY FF YV+ FDI+SDAFSTFKEL TRHK + AEFL
Sbjct: 416 GLMLRESIRHDHLAKIILYSDVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKAIIAEFL 475
Query: 690 EANYDKVFS-HINDF*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
++NYD F+ + N + + S DRHNF+ MT+YI+NPD
Sbjct: 476 DSNYDTFFAQYQNLLNSKNYVTRRQSLKLLGELLLDRHNFNTMTKYISNPD 526
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 AEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPT 429
AEP ++ +V AQLAQE+Y + +FE KKDV Q+FNN+LRRQIGTRSPT
Sbjct: 329 AEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLRRQIGTRSPT 388
Query: 430 VEYICTKPEILFTLMSGYEHQEIA 501
VEY+ +PEIL L+ GY +IA
Sbjct: 389 VEYLGARPEILIQLVQGYSVPDIA 412
Score = 35.5 bits (78), Expect = 0.047
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 13/57 (22%)
Frame = +2
Query: 116 EKPCGVVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLIKNMLYG 247
+ P VV++L++ +T L++ DKK +KA ++VSKN+ +IK+ +YG
Sbjct: 269 KSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMIKSFIYG 325
>Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical
protein Y53C12A.4 protein.
Length = 338
Score = 109 bits (262), Expect = 2e-24
Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Frame = +3
Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
G+MLRE R+E LA+I+LYS+ F FF +V+ FDIA+DAFSTFK+L+T+HK +CAE+L
Sbjct: 147 GSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFDIATDAFSTFKDLMTKHKNMCAEYL 206
Query: 690 EANYDKVFSHINDF-*IRKLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
+ NYD+ F + + S DRHNFS M +YIT+P+
Sbjct: 207 DNNYDRFFGQYSALTNSENYVTRRQSLKLLGELLLDRHNFSTMNKYITSPE 257
Score = 89.4 bits (212), Expect = 3e-18
Identities = 43/74 (58%), Positives = 51/74 (68%)
Frame = +1
Query: 280 VAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPEI 459
V QLAQE+Y + +FE KKDVA VFNN+LRRQIGTRSPTVEY+ +PEI
Sbjct: 70 VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEYLAARPEI 129
Query: 460 LFTLMSGYEHQEIA 501
L TL+ GYE +IA
Sbjct: 130 LITLLLGYEQPDIA 143
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Frame = +2
Query: 122 PCGVVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSVQ--NHKQISL 280
P VV++L+DA+ ++R ++K EKA E+ +K L L K +YG+ N++Q++
Sbjct: 13 PADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDANEPNNEQVTQ 72
Query: 281 L 283
L
Sbjct: 73 L 73
>AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 370 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 471
D VF N L +Q G PT Y+C + I TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350
>AF039716-8|AAB96738.1| 384|Caenorhabditis elegans
Paf-acetylhydrolase protein 1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 370 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 471
D VF N L +Q G PT Y+C + I TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350
>Z93385-9|CAB07642.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 143 LKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSVQNHKQI 274
LK A++ L R + K E K+ V +NM T QNH ++
Sbjct: 9 LKSALSQLNRERSEMVKDLEKAQKDYVAARNMHKSTGSQNHLEV 52
>Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 143 LKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSVQNHKQI 274
LK A++ L R + K E K+ V +NM T QNH ++
Sbjct: 9 LKSALSQLNRERSEMVKDLEKAQKDYVAARNMHKSTGSQNHLEV 52
>Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical
protein T27E9.4b protein.
Length = 591
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +3
Query: 516 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEA 695
M +++ +AKI LY+DD +F + V++ ++ ++S F EL ++ + LC L
Sbjct: 1 MFASDVKHDKIAKIPLYTDDDLDFIK-VDILD-EMYKKSYSIFNELRSKCQ-LCDVALLV 57
Query: 696 NYDKVFSH 719
K+ +H
Sbjct: 58 ENRKLSAH 65
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +3
Query: 516 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEA 695
M +++ +AKI LY+DD +F + V++ ++ ++S F EL ++ + LC L
Sbjct: 1 MFASDVKHDKIAKIPLYTDDDLDFIK-VDILD-EMYKKSYSIFNELRSKCQ-LCDVALLV 57
Query: 696 NYDKVFSH 719
K+ +H
Sbjct: 58 ENRKLSAH 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,607
Number of Sequences: 27780
Number of extensions: 346238
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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