Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1328
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47540.1 68418.m05869 Mo25 family protein similar to MO25 pro...    87   1e-17
At4g17270.1 68417.m02596 Mo25 family protein similar to MO25 pro...    87   2e-17
At5g18940.2 68418.m02250 Mo25 family protein similar to SP|Q0613...    81   1e-15
At5g18940.1 68418.m02249 Mo25 family protein similar to SP|Q0613...    81   1e-15
At2g03410.1 68415.m00299 Mo25 family protein similar to MO25 pro...    80   2e-15
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ...    29   2.9  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    29   3.8  
At4g30180.1 68417.m04291 expressed protein                             29   3.8  

>At5g47540.1 68418.m05869 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 344

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
 Frame = +3

Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
           G M REC R++ +AK +L SD    FF Y+++  FDIA+DA +TFKELLTRHK   AEFL
Sbjct: 149 GAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFL 208

Query: 690 EANYDKVFSHINDF*IR--KLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
             N D  F+  N   +        + +         DR N ++MT+Y+++ D
Sbjct: 209 TKNEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTKYVSSRD 260



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
           AEP  +   AQL QE +             +++ E +KD  QV  N+ R+Q+ +R    +
Sbjct: 64  AEPVAEAC-AQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASD 122

Query: 436 YICTKPEILFTLMSG-YEHQEIA 501
           Y+    +++  L+ G +E+ ++A
Sbjct: 123 YLEANIDLMDVLIEGDFENTDMA 145


>At4g17270.1 68417.m02596 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 343

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
 Frame = +3

Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
           GTM REC R++ +AK +L S+    FF Y+++  FDIA+DA +TFKELLTRHK   AEFL
Sbjct: 148 GTMFRECIRHQIVAKYVLDSEHVKKFFYYIQLPNFDIAADAAATFKELLTRHKSTVAEFL 207

Query: 690 EANYDKVFSHINDF*IR--KLCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
             N D  F+  N   +        + +         DR N ++MT+Y+++ D
Sbjct: 208 IKNEDWFFADYNSKLLESTNYITRRQAIKLLGDILLDRSNSAVMTKYVSSMD 259



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/82 (26%), Positives = 42/82 (51%)
 Frame = +1

Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
           AEP  +   AQL QE +              ++ E +KD  QV  N+ R+Q+ +R    +
Sbjct: 64  AEPVAEAC-AQLTQEFFKADTLRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLIAAD 122

Query: 436 YICTKPEILFTLMSGYEHQEIA 501
           Y+ +  +++  L+ G+E+ ++A
Sbjct: 123 YLESNIDLMDFLVDGFENTDMA 144


>At5g18940.2 68418.m02250 Mo25 family protein similar to SP|Q06138
           MO25 protein {Mus musculus}; contains Pfam profile
           PF03204: Mo25 protein family
          Length = 323

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/69 (52%), Positives = 53/69 (76%)
 Frame = +3

Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
           G+MLREC ++ +LAK +L S  F  FF++VE+  FD+ASDAFSTFK+LLT+H  + +EFL
Sbjct: 147 GSMLRECIKFPSLAKYILESACFELFFKFVELPNFDVASDAFSTFKDLLTKHDSVVSEFL 206

Query: 690 EANYDKVFS 716
            ++Y ++ S
Sbjct: 207 TSHYTELLS 215



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = +1

Query: 259 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 438
           EP  D  V QLA E                + +E +KD+   ++ +L++++G     V+Y
Sbjct: 64  EPNADQAV-QLALEFCKEDVVSLVIHKLHILGWETRKDLLHCWSILLKQKVGDTYCCVQY 122

Query: 439 ICTKPEILFTLMSGYEHQEIA----SNLARCCENVLDMRLWLK*CCIQMIF 579
                E+L +L+  Y+++EIA    S L  C +     +  L+  C ++ F
Sbjct: 123 FEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFF 173


>At5g18940.1 68418.m02249 Mo25 family protein similar to SP|Q06138
           MO25 protein {Mus musculus}; contains Pfam profile
           PF03204: Mo25 protein family
          Length = 345

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/68 (52%), Positives = 52/68 (76%)
 Frame = +3

Query: 510 GTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFL 689
           G+MLREC ++ +LAK +L S  F  FF++VE+  FD+ASDAFSTFK+LLT+H  + +EFL
Sbjct: 147 GSMLRECIKFPSLAKYILESACFELFFKFVELPNFDVASDAFSTFKDLLTKHDSVVSEFL 206

Query: 690 EANYDKVF 713
            ++Y + F
Sbjct: 207 TSHYTEFF 214



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = +1

Query: 259 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 438
           EP  D  V QLA E                + +E +KD+   ++ +L++++G     V+Y
Sbjct: 64  EPNADQAV-QLALEFCKEDVVSLVIHKLHILGWETRKDLLHCWSILLKQKVGDTYCCVQY 122

Query: 439 ICTKPEILFTLMSGYEHQEIA----SNLARCCENVLDMRLWLK*CCIQMIF 579
                E+L +L+  Y+++EIA    S L  C +     +  L+  C ++ F
Sbjct: 123 FEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFF 173


>At2g03410.1 68415.m00299 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 348

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
 Frame = +3

Query: 516 MLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCAEFLEA 695
           ML+EC R++ +AK +L S +   FF YV++  FD+A+DA   F+ELLTRHK   AE+L  
Sbjct: 151 MLKECVRHQVVAKYILESKNLEKFFDYVQLPYFDVATDASKIFRELLTRHKSTVAEYLAK 210

Query: 696 NYDKVFSHINDF*IRK--LCNSKASXXXXXXXXXDRHNFSIMTRYITNPD 839
           NY+  F+  N   + K      + +         DR N  +M +Y+++ D
Sbjct: 211 NYEWFFAEYNTKLLEKGSYFTKRQASKLLGDVLMDRSNSGVMVKYVSSLD 260



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +1

Query: 256 AEPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVE 435
           AEP  +  +  L QE +             ++D E +KD  Q+  N+ ++Q+  R    E
Sbjct: 64  AEPVPEACLL-LTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLVASE 122

Query: 436 YICTKPEILFTLMSGYEH 489
           Y+ +  +++ +L+ G +H
Sbjct: 123 YLESNLDVIDSLVEGIDH 140


>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 535

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 371 SFFPSKSIRFKFCIKSSNKLVLYISCANCATMISV 267
           S + S+S   KFCI   +K  + +SC  C  ++ +
Sbjct: 371 SLYISRSTEEKFCIACGDKATMVLSCEECDFILDI 405


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 445 TKPEILFTLMSGYEHQEIASNL 510
           TKPE++F L++G E QEI S L
Sbjct: 387 TKPEVMFGLINGAEKQEIWSYL 408


>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 113 SEKPCGVVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSVQN-HKQISLLHN 289
           S  P     S  D +  LER DK+    +  + + L  +K +L G    N  + +S + N
Sbjct: 79  SSNPTTTTSSSSDGIRILERPDKEGGNEEGGIEERLRELKKLLPGGEEMNVEEMLSEIGN 138

Query: 290 *HRKCITL 313
            + KC+ L
Sbjct: 139 -YIKCLEL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,433
Number of Sequences: 28952
Number of extensions: 307272
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)