Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1327X
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 29 0.29
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 1.6
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 2.1
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 3.6
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 25 4.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 4.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 4.8
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 25 4.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 6.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 6.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 8.4
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 344 VIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVDGFDQCSAEY 472
++KK ++ G +++F+ Y+ + Q V+DG C A+Y
Sbjct: 123 ILKKAKIIPGSEARVFVGYDSRSTSEILAQAVIDGIVVCKAKY 165
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/47 (31%), Positives = 32/47 (68%)
Frame = +2
Query: 269 QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEV 409
+LK++ + +QLL+E+E+ E+E + ++L QLS+L ++ N++
Sbjct: 614 ELKSTENRYRQLLQEKEE-ELEIQKAAVDESLL--QLSKLQLDRNDI 657
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 304 TKRARRQRSRNTPGNKEKYHVERPVVSA 387
+KR + QR + KEKY E P VS+
Sbjct: 101 SKRRKSQREKQEQLQKEKYEKENPKVSS 128
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +2
Query: 257 VALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQI 436
+ L++ + + C + + ++ Q +KNT+L+ QLS L E N+ E +K+++I
Sbjct: 65 INLEEFRQLKRNCDLYQRNLQKLQLLFKQQSQKNTLLEKQLS-LQTELNQ--EKDKRVKI 121
Query: 437 VVD 445
+ D
Sbjct: 122 LQD 124
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +2
Query: 263 LQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLET 418
L+QLK + + L KE E+N + + +K++ ++K ++L + NE +E+
Sbjct: 651 LEQLKMTEAEVDSLRKENEEN--KQVIALKESELVKSNDNKLLL--NEQIES 698
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 256 SGSSATKNITGTVSTTTKRARRQRSRNTPGNKEKY 360
SG T +TGT + K RQ ++ K+KY
Sbjct: 111 SGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKY 145
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 262 SSATKNITGTVSTTTKRARRQRSRNTPGNKE 354
SS N+ T+ST AR + RN P N +
Sbjct: 399 SSTNTNLEETISTLEYAARAKSIRNKPQNNQ 429
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 256 SGSSATKNITGTVSTTTKRARRQRSRNTP 342
S +SAT + G S+ K RR+R+ N P
Sbjct: 150 SNASATASKNGAKSSKRKTTRRRRTPNRP 178
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 275 KTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQ 385
KT R + ++ E E NE + +KKNT+ + ++ +
Sbjct: 113 KTKRPRARRAANEGEHNESVPAKKVKKNTVKEEEIEK 149
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 257 VALQQLKTSREQCQQLLKEREDNEVETLQVIKKNT 361
V +++ + + E C +L+E+E +V+ QV+ T
Sbjct: 862 VDIERHRQTVESCTNILREKEAKKVQCAQVVADYT 896
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 266 QQLKTSREQCQQLLKEREDNEVETLQVIKKN 358
QQL S ++L +E+ D+ V LQV+K+N
Sbjct: 328 QQLLISENSLREL-QEKYDSVVSELQVVKEN 357
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 341 QVIKKNTMLKGQLSQLFIEY-NEVLETNKKLQI 436
++ K NTML Q +LF Y N+ L +K Q+
Sbjct: 326 KLTKNNTMLVTQQLELFARYLNKDLRAGQKAQV 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,664
Number of Sequences: 5004
Number of extensions: 25791
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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