Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1327X
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0676 - 35460281-35460648,35462097-35462382                       36   0.024
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733...    28   4.8  

>03_06_0676 - 35460281-35460648,35462097-35462382
          Length = 217

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 266 QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ 433
           Q++    E  ++L  E ED+E + L+       L+ Q  +L +EY+ +LE N+ LQ
Sbjct: 155 QEIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSEELLLEYDRLLEDNQILQ 210


>12_01_0800 -
           7331444-7331539,7331617-7331742,7331830-7331907,
           7332515-7332747,7332832-7332871,7333016-7333070,
           7333158-7333345,7333416-7333475,7333686-7333769,
           7334817-7334903,7335178-7335246,7335354-7335410
          Length = 390

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
 Frame = +2

Query: 275 KTSREQCQQ--LLKEREDNEV-ETLQVIKK-NTMLKGQLSQLFIEYNEVLETNKKLQ 433
           +++RE  ++  L K+ E  E+ +  +V+K+ NT L+ +++++  EY+E+L  N  L+
Sbjct: 303 QSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDELLSKNSSLK 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,317,391
Number of Sequences: 37544
Number of extensions: 129287
Number of successful extensions: 323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)