Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1327X
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   2.8  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                27   6.5  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  27   6.5  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)                    27   8.6  
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.6  
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)                   27   8.6  

>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 257 VALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQI 436
           +A Q L+       + LKE + N VET++V +  T LK +      + N  +   K+ + 
Sbjct: 163 LAEQYLEEDAAMFDEFLKENDKNSVETIKVAEAETKLKLEKVAEIKKINGHMMAIKRQKS 222

Query: 437 VVDGFDQCSAEY 472
             DG    S+ Y
Sbjct: 223 DADGESLASSTY 234


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +2

Query: 260 ALQQLKTSRE--QCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ 433
           A+++++   E    + L K+RED + E L + +  T +  +  ++  E  ++ E NKKL 
Sbjct: 459 AVKEIEKDEELKDVESLKKDREDLKNECLALSETVTKIANEKREMEKEIEKLEEENKKLV 518

Query: 434 IVVDGFDQCSAEYVESLQ 487
             ++ F + + + +ESL+
Sbjct: 519 SEINDF-KVNIQKLESLK 535


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 247 TNLSGSSATKNITGTVSTTTKRARRQRSRNT 339
           T LSGS++T N T   S+T +  RR+ + N+
Sbjct: 265 TPLSGSTSTSNATSDSSSTWEEPRRENASNS 295


>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1457

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 257 VALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ 433
           V   +L  + E+C+Q   E  D + E L + ++NT  + QL +      E+ E+   LQ
Sbjct: 619 VVESELAVATERCRQNAAEISDQQHEILSLNEENTAFQQQLEKREKHIQELSESLDSLQ 677


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 341 QVIKKNTMLKGQLSQLFIEYNEVLETNKKL 430
           +V+ + T+ K QLS+ FIE N+ L   K+L
Sbjct: 338 KVLNRKTLKKSQLSKEFIELNKQLSEAKRL 367


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
 Frame = +2

Query: 308  KEREDNEVETLQVIKKN-----TMLKGQLSQL 388
            KER D E+E L+  KKN     T +KG+LS+L
Sbjct: 1863 KERADKEMEQLRSNKKNLEKDLTQVKGELSRL 1894


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +2

Query: 269 QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQL 388
           Q+   +EQ Q+L  ER+D ++   ++ ++NT  + Q+ ++
Sbjct: 107 QVTRLKEQVQRLQDERDDGQLRETKLQQENTRYERQMREM 146


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 250 NLSGSSATKNITGTVSTTTKRARRQRSRNTPGN 348
           NL GSS  +  T + ST +K  +R + ++ PG+
Sbjct: 250 NLPGSSVYRPRTASXSTISKSEKRTQKQSNPGH 282


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/51 (23%), Positives = 30/51 (58%)
 Frame = +2

Query: 287  EQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIV 439
            E  +Q  K +++NE ET +   +   ++ Q+ ++  + NE+  ++K L+++
Sbjct: 5766 ELAEQDKKSQDNNESETYRPTTEFAQIQSQVQEVSEKLNELQTSSKDLKVL 5816


>SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)
          Length = 533

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 KNITGTVSTTTKRARRQRSRNTPGNKEKYHVERPVVSAL 390
           K I G VST TK A + + R T     K   +RPV  ++
Sbjct: 386 KAIKGNVSTRTKAALQPKQRITSKAVSKAVAKRPVAKSI 424


>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +2

Query: 308 KEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVDGFDQCSAEYVESLQ 487
           K + DN  E   ++ +    +G+L ++  E+NE      +L+ ++    +  AEY  +L 
Sbjct: 512 KAKADNAEEIRHLLTQKEETQGKLKKVVAEFNERANDIAELEGLLKKHKEQEAEYEHALT 571

Query: 488 LSA 496
            S+
Sbjct: 572 KSS 574


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 287  PVMFLVAEEPLKLVINLTSFGTSGHHFGFV 198
            P  F +A+  LK+++      T+G HFG +
Sbjct: 1139 PTNFNIAKTFLKILVERMKISTNGSHFGLI 1168


>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
          Length = 496

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/49 (24%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +2

Query: 266 QQLKTSREQCQQLLKER-EDNEVETLQVIKKNTMLKGQLSQLFIEYNEV 409
           Q+ K +  +C++  ++R E+ + E  ++ ++N  ++  ++ L +EYNE+
Sbjct: 295 QRNKQAASRCREKRRQRLEELQREATELEEQNAEVERDIATLRVEYNEL 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,423,898
Number of Sequences: 59808
Number of extensions: 173102
Number of successful extensions: 483
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)