Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1327X
(497 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical... 31 0.46
U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z92777-5|CAB07171.1| 409|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 28 4.3
Z50797-4|CAA90674.1| 339|Caenorhabditis elegans Hypothetical pr... 27 7.6
AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical ... 27 7.6
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 27 7.6
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 27 10.0
>AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical
protein F57B10.1 protein.
Length = 690
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 275 KTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ 433
+TSR++ Q +++ ED E+ K+N LK Q+ +L E V+ KKLQ
Sbjct: 299 QTSRKRKQDYIEQLEDRVSEST---KENQALKQQIERLSSENQSVISQLKKLQ 348
>U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical
protein K06A1.5 protein.
Length = 534
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +2
Query: 260 ALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNK 424
A ++L S + + +R+ +ET ++KK T+L+ +L++L E N V+ T +
Sbjct: 88 ANRKLADSESRYSLVSSQRDKLRIETDAIVKKMTVLENELAEL-KEENSVINTER 141
>Z92777-5|CAB07171.1| 409|Caenorhabditis elegans Hypothetical
protein C17H1.7 protein.
Length = 409
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = +2
Query: 266 QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVD 445
+ L++ ++ + + RE+N+ ETL++I++N L+ + +F + + + NK+ Q
Sbjct: 107 EALRSQKDADKMEIMTRENNDQETLKLIQEN-KLQAE-GNIFANVSALKDQNKRFQ---- 160
Query: 446 GFDQCSAE 469
D+C +E
Sbjct: 161 --DECHSE 166
>Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical
protein C47G2.4 protein.
Length = 644
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 131 ISAFYCLIVIFILFYEGTINYFIQIQNDDQR 223
I ++ LI++F+L + I +F + +ND QR
Sbjct: 40 IGWYFSLIIVFVLPLDVAITFFHKCENDRQR 70
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 275 KTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVD 445
K EQ + KE+ EVE L +I + KG ++L++ + ET LQ +D
Sbjct: 47 KNLLEQNKSEAKEKTSKEVEELVLIDEPVADKGDDTKLYVSTPKA-ETENNLQAALD 102
>Z50797-4|CAA90674.1| 339|Caenorhabditis elegans Hypothetical
protein T22H6.3 protein.
Length = 339
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 143 YCLIVIFILFYEGTINYFIQIQNDDQR 223
YCL F++F+ T+N F+ ++ D ++
Sbjct: 132 YCLSPCFLIFFVWTLNVFLFMKPDQEK 158
>AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical
protein Y70G10A.2 protein.
Length = 711
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 281 SREQCQQLLKEREDNEVET-LQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVDGFDQ 457
SR Q Q LL R D + L KKN + L ++F+E L+ N+ + +
Sbjct: 542 SRNQ-QLLLHHRWDIRLNAHLTEGKKNLSIDDALVKVFVEEMHRLQENRGTIKQKEAIKK 600
Query: 458 CSAEYVESL 484
C AEY+ ++
Sbjct: 601 CYAEYMNTV 609
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 275 KTSREQCQQLLKER-EDNEVETLQVIKKNTMLKGQLSQLFI-EYNEVLETNKKLQ 433
K EQC+Q+ KER E E + Q +++ +L +L I E +LE ++L+
Sbjct: 186 KLYEEQCRQIEKERKEQEERKRKQELEEQRKRNEELKRLRIAEEKRLLEEQQRLR 240
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 263 LQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQI 436
+ QL+ SR++ L + RE+ E + ++ +GQ+ +L NE ++ +L+I
Sbjct: 1278 IDQLERSRDELDHLNRVREEEEHAFANMQRRLATAEGQIQEL----NEQIQEETRLKI 1331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,850,626
Number of Sequences: 27780
Number of extensions: 138151
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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