Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1327X
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.4  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +2

Query: 332 ETLQVIKKNTMLKGQLSQLFI-----EYNEVLETNKKLQIVVDGFD 454
           ETLQ I     +K ++S + +     EY  VL  + ++Q V+ GFD
Sbjct: 347 ETLQAIT-GLKVKRRISFILVHGFPLEYEYVLAVSNRIQKVIYGFD 391


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262 SSATKNIT-GTVSTTTKRARRQRSRNTPGNKEK 357
           S+AT  +T GT +  T+R R++R  +  G  ++
Sbjct: 248 SNATAAMTTGTTTIPTRRLRKRRQNDGEGADDR 280



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 262 SSATKNITGTVSTTTKRARRQRSRNTP 342
           ++ T   T T +TTT    +  S  TP
Sbjct: 663 TTTTTTTTTTTTTTTPNTTQNASATTP 689


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 256 SGSSATKNITGTVSTTTKRARRQRSRNTPGNKEKYHVER 372
           + S++ +N T     T+ R  R+RS +   N+E    +R
Sbjct: 212 TSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYREKDR 250


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 158 IFILFYEGTINYFIQIQNDD 217
           I IL    TIN  + +QND+
Sbjct: 85  IDILINNATINIDVTLQNDE 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,203
Number of Sequences: 438
Number of extensions: 1956
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)