Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1327X
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68790.1 68414.m07863 expressed protein                             31   0.33 
At5g41140.1 68418.m05001 expressed protein                             29   1.7  
At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family pr...    29   1.7  
At3g46450.2 68416.m05036 SEC14 cytosolic factor family protein /...    29   2.3  
At3g46450.1 68416.m05035 SEC14 cytosolic factor family protein /...    29   2.3  
At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putati...    29   2.3  
At1g61970.1 68414.m06990 mitochondrial transcription termination...    28   3.0  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    28   4.0  
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T...    27   5.3  
At5g27330.1 68418.m03263 expressed protein                             27   5.3  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    27   7.0  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   7.0  
At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.0  
At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    27   9.3  

>At1g68790.1 68414.m07863 expressed protein
          Length = 1085

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 18/56 (32%), Positives = 33/56 (58%)
 Frame = +2

Query: 266 QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ 433
           QQ+   +++ + LLKERE+ + +  +  K+   L  + + +  E NEV E N+KL+
Sbjct: 506 QQIDKVKQEEELLLKEREELKQDKERFEKEWEALDKKRANITREQNEVAEENEKLR 561


>At5g41140.1 68418.m05001 expressed protein
          Length = 983

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 287  EQCQQLLKEREDN-EVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVDGFDQCS 463
            +Q +  +K +E+  E  +   I+K   LK ++ +L  + NEV + +++    + G +  +
Sbjct: 851  KQLEGQIKLKENALEASSKIFIEKEKDLKNRIEELQTKLNEVSQNSQETDETLQGPEAIA 910

Query: 464  AEYVESLQLS 493
             +Y E L LS
Sbjct: 911  MQYTEVLPLS 920


>At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 261

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 253 LSGSSATKNITGTVSTTTKRARR-QRSRNTPGNKEK 357
           LS SSA  +I G +ST    +RR +RS+N    KE+
Sbjct: 107 LSTSSAQVSINGNISTKNNSSRRGKRSKNREEEKER 142


>At3g46450.2 68416.m05036 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}
          Length = 494

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/64 (28%), Positives = 36/64 (56%)
 Frame = +2

Query: 293 CQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVDGFDQCSAEY 472
           C  +L++   N +  L +I+   +++  +SQ FI+      T KKL+I  + F +  +EY
Sbjct: 335 CSSILQDHFPNRLGCLFIIRLPPVVR-VISQTFIQILRPT-TRKKLRIEGETFHRVLSEY 392

Query: 473 VESL 484
           +++L
Sbjct: 393 LQTL 396


>At3g46450.1 68416.m05035 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}
          Length = 486

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/64 (28%), Positives = 36/64 (56%)
 Frame = +2

Query: 293 CQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQIVVDGFDQCSAEY 472
           C  +L++   N +  L +I+   +++  +SQ FI+      T KKL+I  + F +  +EY
Sbjct: 327 CSSILQDHFPNRLGCLFIIRLPPVVR-VISQTFIQILRPT-TRKKLRIEGETFHRVLSEY 384

Query: 473 VESL 484
           +++L
Sbjct: 385 LQTL 388


>At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putative
           / HD-ZIP transcription factor, putative similar to
           homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
           (HD-ZIP protein ATHB-3 (SP:Q00466| [Arabidopsis
           thaliana]; similar to Helianthus annuus gi|349379, and
           carrot, gi|1435022. Contains Homeobox domain motif
          Length = 255

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 332 ETLQVIKKNTMLKGQLSQLFIEYNEVLET-NKKLQIVVDGFDQCSAEYVESLQLS 493
           +T Q+ K   MLK Q   L  E NEVL+T N+KLQ  V      S E +ES+ L+
Sbjct: 124 KTKQLEKDYDMLKRQFESLRDE-NEVLQTQNQKLQAQVMALK--SREPIESINLN 175


>At1g61970.1 68414.m06990 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 418

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
 Frame = +2

Query: 263 LQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ--- 433
           L++   + + C  L +   +N++  + V+++  M    L  L I  ++ +   +K +   
Sbjct: 168 LEKSSKNEKLCHSLPQGNLENKIRNVSVLRELGMPHKLLFSLLISDSQPVCGKEKFEETL 227

Query: 434 --IVVDGFDQCSAEYVESLQL 490
             +V  GFD  ++++VE+LQ+
Sbjct: 228 KKVVEMGFDPTTSKFVEALQV 248


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +2

Query: 269  QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIEYNEVLETNKKLQ 433
            +++T   +  ++  E +   VE L ++KK    +G + +  I  NE++  N+K++
Sbjct: 1471 KMETLEHEIAKMKIEADQEYVENLCILKKFEEAQGTIREADITVNELVIANEKMR 1525


>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
           (TITAN3) very strong similarity to SMC2-like condensin
           (TITAN3) [Arabidopsis thaliana] GI:14279543; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1175

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 263 LQQLKTSREQCQQLLKEREDNEVETLQ 343
           L+QLKT  E C++ LKER+   +  L+
Sbjct: 414 LKQLKTKIEHCEKELKERKSQLMSKLE 440


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 257 VALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQL 379
           + L+Q    R+Q + L + ++  E+E ++  K+ T+L+ +L
Sbjct: 60  ILLKQTMEKRQQIESLFQAKDSLEIELVRSGKEKTLLREEL 100


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 266 QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLFIE 397
           ++LKT  E CQ L +E+     E    + +NT+L   L QL +E
Sbjct: 583 RKLKTFEEACQSLSEEKSCLISENQHNVIENTVLIEWLRQLRLE 626


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 483 SDSTYSALH*SKPSTTICNFLLVSRTSLYSM 391
           S S+Y ++H SK S +    +L S  SLYS+
Sbjct: 46  SSSSYRSIHGSKSSLSFLFLILFSLRSLYSL 76


>At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 365

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 269 QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKG 373
           Q + SREQ +++    E+++V  L V+K N + KG
Sbjct: 188 QAEISREQLEEIALGLEESKVNFLWVVKGNEIGKG 222


>At2g27170.1 68415.m06029 structural maintenance of chromosomes
           (SMC) family protein similar to basement
           membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus] GI:1785540; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain. No suitalble
           start codon was identified.
          Length = 1207

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 266 QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLK 370
           + LK   ++ Q L KE+E  E +  + +KK T L+
Sbjct: 272 ESLKELTKELQTLYKEKETVEAQQTKALKKKTKLE 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,026,650
Number of Sequences: 28952
Number of extensions: 118604
Number of successful extensions: 337
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)