Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1316
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical p...    28   5.3  
U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical p...    28   5.3  
BX677430-1|CAI79176.1|  340|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical
           protein B0280.1b protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 543 HFRYQNQHTTHKNAYRYTLLRRLSTSNLY 457
           H  + NQ+  +KN+Y Y +   L  S +Y
Sbjct: 29  HANFINQYEKNKNSYHYIMAEHLRVSGIY 57


>U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical
           protein B0280.1a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 543 HFRYQNQHTTHKNAYRYTLLRRLSTSNLY 457
           H  + NQ+  +KN+Y Y +   L  S +Y
Sbjct: 29  HANFINQYEKNKNSYHYIMAEHLRVSGIY 57


>BX677430-1|CAI79176.1|  340|Caenorhabditis elegans Hypothetical
           protein VB0395L.1 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 183 C*LQFYGIWIIISSILCFFYILCV 112
           C L+F   W+++S+I C  Y+  V
Sbjct: 12  CNLRFLLTWLVLSAIACIIYVFVV 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,752
Number of Sequences: 27780
Number of extensions: 246315
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)