Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1316
(671 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 24 1.1
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 24 1.1
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 6.1
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 6.1
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 21 8.1
AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. 21 8.1
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.2 bits (50), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 499 ISVFV-CCMLVLVSEMLIW 552
I +++ CCMLV+VS + W
Sbjct: 246 IQIYIPCCMLVIVSWVSFW 264
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.2 bits (50), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 499 ISVFV-CCMLVLVSEMLIW 552
I +++ CCMLV+VS + W
Sbjct: 246 IQIYIPCCMLVIVSWVSFW 264
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 603 NNVIYQHFNNFNT*VYAPY*HFRYQN 526
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 663 KERLLEGTSA*PTIRKHSSVNNVIYQHFNNFNT*VYAPY*HFRYQNQHTTHKN 505
++R TS P I S NN Y ++NN+N Y + N +KN
Sbjct: 68 QDRTERETSKEPKIISSLS-NNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 663 KERLLEGTSA*PTIRKHSSVNNVIYQHFNNFNT*VYAPY*HFRYQNQHTTHKN 505
++R TS P I S NN Y ++NN+N Y + N +KN
Sbjct: 68 QDRTERETSKEPKIISSLS-NNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 171 FYGIWIIISSILCFFYILCV 112
FY II S L FYI C+
Sbjct: 338 FYNTDFIIYSSLSSFYIPCI 357
>AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein.
Length = 50
Score = 21.4 bits (43), Expect = 8.1
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 535 SEMLIWRIDLSVK 573
++M+IW +D S+K
Sbjct: 18 NQMMIWALDCSIK 30
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,680
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -