Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.23 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 136 SSNAFRFDGWGSCCNYTETLELISQGGWR 50
           + N+ ++ G      Y E +EL  +GGW+
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWK 312


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 135  AVMRFGLTGGAAVVTILRP*NSYLKVGGVIYVVDV 31
            A+    +TG   +   L P   +  V G+IY++ +
Sbjct: 1005 AIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSI 1039


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 135  AVMRFGLTGGAAVVTILRP*NSYLKVGGVIYVVDV 31
            A+    +TG   +   L P   +  V G+IY++ +
Sbjct: 1005 AIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSI 1039


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 135  AVMRFGLTGGAAVVTILRP*NSYLKVGGVIYVVDV 31
            A+    +TG   +   L P   +  V G+IY++ +
Sbjct: 1005 AIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSI 1039


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 135  AVMRFGLTGGAAVVTILRP*NSYLKVGGVIYVVDV 31
            A+    +TG   +   L P   +  V G+IY++ +
Sbjct: 1005 AIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSI 1039


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 130 NAFRFDGWGSCCNYTETLELISQGGW 53
           +A R+ G      Y E +E  + GGW
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGW 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,022
Number of Sequences: 336
Number of extensions: 3136
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)