Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    25   6.9  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.1  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 141 REAVMRFGLTGGAAVVTI-LRP*NSYLKVGGVIYVVDVYELR 19
           R  V R+ +  G +     L P N YL +G    +V++Y+L+
Sbjct: 381 RSVVRRWQVQDGVSTTHFCLDPSNKYLAIGSKSGIVNIYDLQ 422


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 239 YAPSIAKYWCYYKLPYWWQDVLS 171
           Y+P  A Y+C     Y W  VLS
Sbjct: 42  YSPLSASYYCLLYASYTWNFVLS 64


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   GPTVTGAHRHLQRK*RHPP*DMSSKVS 86
           G T+    + L R  RHPP D + KVS
Sbjct: 170 GLTIFAPLKELTRVFRHPPPDFAGKVS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,762
Number of Sequences: 5004
Number of extensions: 48714
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)