Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0051 - 20288456-20291728                                         29   3.1  
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977...    28   7.1  
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    28   7.1  
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704...    27   9.4  

>03_05_0051 - 20288456-20291728
          Length = 1090

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 337 WYIQIHFITFLEWQIM*NVTNCNGSSDYS*LMITLRQSQSI 215
           W+IQ+ F  +L +Q+     +C  S + + L + L ++QS+
Sbjct: 12  WFIQVIFDKYLSYQLQSWAADCGISHEMNRLRVALLRTQSV 52


>06_02_0136 +
           12195422-12195435,12196047-12196122,12196896-12197707,
           12197941-12198010,12199469-12199557,12199633-12199666
          Length = 364

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = +2

Query: 395 LCGMIRGHSAPTLMWDRSKKQKKK--DNYKFTKQ*TNITYEYFSF-----PAKMVAIFKS 553
           +C  +  +  P+++W  SK++K +  DNYK   +  +I  +YF F     P      +K 
Sbjct: 268 ICRKLSYYVIPSVLWYFSKEEKLEIIDNYKAKLK--SIDCKYFDFGTGTCPFGSSCFYKH 325

Query: 554 TYRD 565
            YRD
Sbjct: 326 AYRD 329


>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 159 LPVRTQDVLPPVR*FVITPILCD*RSVIINHE*SEDPLQLV 281
           L +  +  +PPV      P +C     IINH+ SEDP  ++
Sbjct: 72  LEIDLEQEVPPVETANWDPAICTIPDHIINHQFSEDPQNIL 112


>03_02_0275 +
           7042433-7042732,7042864-7043140,7043751-7044231,
           7044943-7045491,7045556-7045680,7045824-7045966
          Length = 624

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 371 GKVAGRKHLCGMIRGHSAPTLMWDRSKK--QKKKDNYKF 481
           G   GR H    I GHS      D+SKK  Q +++ Y++
Sbjct: 357 GGATGRDHTWSSISGHSCGRFTEDQSKKTEQARRNLYRY 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,608
Number of Sequences: 37544
Number of extensions: 301231
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)