Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44279| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               30   1.4  
SB_30726| Best HMM Match : BPD_transp_1 (HMM E-Value=7.5)              28   7.3  
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)                      27   9.7  

>SB_44279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 320 LYNFP*MANHVKRDQLQWIFRLFVINDYAPSIAKY 216
           L +F  M+ H+K   LQ IF+LFVI+ +  +  K+
Sbjct: 87  LVSFRTMSKHMKTQLLQQIFKLFVIDSFDMNFFKF 121


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 97  NSCPTRQTETHYCFTAEIGGAYPCGLKTS 183
           +SCP  Q E H C   E  G Y C  + S
Sbjct: 195 SSCPGAQIEIHQCSDQECNGIYDCDFEKS 223


>SB_30726| Best HMM Match : BPD_transp_1 (HMM E-Value=7.5)
          Length = 230

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 435 IKVGAECPLIMPHKCLRPATLPKRQLSIIYISS 337
           I+ G +CP    H  +R ++ P+  L++ Y+SS
Sbjct: 69  IRYGGDCPEFTYHGIVRSSSQPELSLALPYLSS 101


>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
          Length = 348

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 515 SIHRLCLFIVW*IYNYPFSSVSCSYPTLR-SVQNVLLSCRISVY 387
           S+ R+C F V+ +Y Y    V C+Y  LR    +V   C  SV+
Sbjct: 45  SLLRVCAFSVFRVYTYSILRV-CAYSVLRVCAYSVFRVCASSVF 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,727,933
Number of Sequences: 59808
Number of extensions: 354775
Number of successful extensions: 1543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)