Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88868-1|AAC24943.1|  619|Drosophila melanogaster elongation fac...    31   1.3  
AY070979-1|AAL48601.1|  619|Drosophila melanogaster RE07731p pro...    31   1.3  
AE014134-2205|AAF53194.1|  619|Drosophila melanogaster CG6382-PA...    31   1.3  
AE014134-2278|AAF53242.2| 1263|Drosophila melanogaster CG5122-PA...    29   4.0  

>U88868-1|AAC24943.1|  619|Drosophila melanogaster elongation factor
           1 alpha-likefactor protein.
          Length = 619

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 368 LGKVAGRKHLCGMIRGHSAPTLMWDRSKKQKKKD 469
           L K AG KHL  ++     PT+ WD+++  + KD
Sbjct: 327 LAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKD 360


>AY070979-1|AAL48601.1|  619|Drosophila melanogaster RE07731p
           protein.
          Length = 619

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 368 LGKVAGRKHLCGMIRGHSAPTLMWDRSKKQKKKD 469
           L K AG KHL  ++     PT+ WD+++  + KD
Sbjct: 327 LAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKD 360


>AE014134-2205|AAF53194.1|  619|Drosophila melanogaster CG6382-PA
           protein.
          Length = 619

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 368 LGKVAGRKHLCGMIRGHSAPTLMWDRSKKQKKKD 469
           L K AG KHL  ++     PT+ WD+++  + KD
Sbjct: 327 LAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKD 360


>AE014134-2278|AAF53242.2| 1263|Drosophila melanogaster CG5122-PA
           protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 98  TAAPPVKPKRITASRQKLVVPTRADSRRPATSKV 199
           +AAP  +P++  + RQ +V P++  S++PA+  +
Sbjct: 403 SAAPKAEPRKKKSMRQGVVNPSKPKSKKPASKAI 436


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,039,911
Number of Sequences: 53049
Number of extensions: 533142
Number of successful extensions: 1202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)