Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    29   2.8  
AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    28   4.9  

>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 96  QQLPHPSNRNALLLHGRNWWCLPVRTQDVLPPVR*FVITPI 218
           Q  PHP++ + ++   R+WW     T  V  P+   V TP+
Sbjct: 423 QPTPHPNSHDPMMAPSRSWWLDSPLTASVQSPLS--VATPL 461


>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 110 PVKPKRITASRQKLVVPTRADSRRPATSKV 199
           PV+P R+    QKLV P +     P T+ V
Sbjct: 38  PVEPPRVAPIAQKLVAPEKKSRPEPVTNPV 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,481
Number of Sequences: 27780
Number of extensions: 275665
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)