Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1315
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 132 LLHGRNWWCLPVRTQDVL 185
           L+H  N+ C  VR QDV+
Sbjct: 374 LIHAGNYTCHAVRNQDVV 391


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 109 WGSCCNYTETLELISQGGWRHLRC 38
           WGSC NY  T   ++      L C
Sbjct: 98  WGSCNNYWNTKNCVNPYDRDSLSC 121


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 437 WDRSKKQKKKDNYKFTKQ*TNITYE 511
           +DR K+++  +NY +  + T+I ++
Sbjct: 176 YDRYKEEESNENYNWEHKETHIDWQ 200


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 239 YAPSIAKYWCYYKLPYWWQDVLSPHG*APP 150
           Y PS+ + +  + +P  + D++ PH  A P
Sbjct: 21  YVPSMREKFLGWNVPPEYSDLVRPHWRAFP 50


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 239 YAPSIAKYWCYYKLPYWWQDVLSPHG*APP 150
           Y PS+ + +  + +P  + D++ PH  A P
Sbjct: 21  YVPSMREKFLGWNVPPEYSDLVHPHWRAFP 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,395
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)