Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1314
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)      184   1e-46
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)           95   5e-20
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)           86   3e-17
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   61   1e-09
SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   5e-06
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           42   6e-04
SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)            39   0.004
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    35   0.068
SB_42654| Best HMM Match : Tfb4 (HMM E-Value=0.0028)                   29   4.5  
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      29   5.9  
SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score =  184 bits (447), Expect = 1e-46
 Identities = 84/86 (97%), Positives = 85/86 (98%)
 Frame = +2

Query: 257 EIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDY 436
           EI+GLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDY
Sbjct: 34  EIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDY 93

Query: 437 VDRGKQSLETICLLLAYKIKYPENSF 514
           VDRGKQSLETICLLLAYKIKYPEN F
Sbjct: 94  VDRGKQSLETICLLLAYKIKYPENFF 119



 Score =  136 bits (328), Expect = 3e-32
 Identities = 62/80 (77%), Positives = 66/80 (82%)
 Frame = +1

Query: 508 FFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLS 687
           FFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAI+DEKIFCCHG   
Sbjct: 118 FFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAILDEKIFCCHG--D 175

Query: 688 PDLQAMEQIRRIMRPTDVPD 747
            D+Q   +  R +  T  PD
Sbjct: 176 KDVQGWGENDRGVSFTFGPD 195



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 18/35 (51%), Positives = 30/35 (85%)
 Frame = +3

Query: 165 DTDELNIDNVIKKLLKVRGEKPGMNVQLTE*KLKG 269
           + ++LN+D++I +LL+VRG +PG NVQLTE +++G
Sbjct: 3   EPEKLNVDSIISRLLEVRGSRPGKNVQLTEAEIRG 37


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 41/90 (45%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
 Frame = +2

Query: 224 EAWYECS-VDGIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGF 400
           E   EC  +   ++K LC K++EI   +  + E++ P+ +CGD+HGQ++DL+ LF  GG 
Sbjct: 16  EQLMECKQLTEAQVKTLCEKAKEILSKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGK 75

Query: 401 PPESNYLFLGDYVDRGKQSLETICLLLAYK 490
            P++NYLF+GDYVDRG  S+ET+ LL+  K
Sbjct: 76  SPDTNYLFMGDYVDRGYYSVETVTLLVTLK 105


>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = +2

Query: 257 EIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDY 436
           +I+ +C  SREIFL QP+LLE+ AP+ I GDIHGQY DLLR F+  G+PP  +Y+FLGDY
Sbjct: 36  QIRQICQVSREIFLQQPMLLEIGAPINIFGDIHGQYEDLLRHFDKLGYPPNESYIFLGDY 95

Query: 437 VDRGKQ 454
           VDR K+
Sbjct: 96  VDRPKR 101


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 38/83 (45%), Positives = 55/83 (66%)
 Frame = +2

Query: 257 EIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDY 436
           ++K LC    E+ L +  +  + +P+ +CGDIHGQ+YDL  LF  GG  P ++Y+F+GD+
Sbjct: 21  DLKKLCDYVCELLLEESNVQPVSSPVTVCGDIHGQFYDLEELFRTGGQVPNTSYVFMGDF 80

Query: 437 VDRGKQSLETICLLLAYKIKYPE 505
           VDRG  SLET   LL  K K+P+
Sbjct: 81  VDRGYYSLETFTRLLTLKAKWPD 103



 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +1

Query: 514 LLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSP 690
           LLRGNHE   I ++YGFYDEC+ +Y N   W+     F+ L VAAI+D ++ C HGGLSP
Sbjct: 107 LLRGNHESRQITQVYGFYDECQSKYGNANAWRYCCKVFDLLTVAAIIDGQVLCVHGGLSP 166

Query: 691 DLQAMEQ 711
           D++ ++Q
Sbjct: 167 DIKTIDQ 173


>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +2

Query: 290 IFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETI 469
           I   +  +LE++AP+ +CGDIHGQ+YDL++LFE GG P  + YLFLGDYVDRG  S+E +
Sbjct: 69  ILRKEKTMLEVDAPITVCGDIHGQFYDLVKLFEVGGSPATTRYLFLGDYVDRGYFSIECL 128



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 19/62 (30%), Positives = 41/62 (66%)
 Frame = +1

Query: 577 KRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIMRPTDVPDQGL 756
           K +Y+  ++    + F+CLP+AA+++++  C HGGLSP++  ++ ++++ R  + P  G 
Sbjct: 188 KIKYSEAVYDACMESFDCLPLAALMNQQFLCVHGGLSPEIHTLDDVKKLDRFKEPPAFGP 247

Query: 757 LC 762
           +C
Sbjct: 248 MC 249


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
 Frame = +2

Query: 269 LCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLL----RLFEYGGFPPESNYLFLGDY 436
           +C   RE+ + +P +L +++P+ + GD+HG + DL+     L+  G     SN+LFLGDY
Sbjct: 652 VCRSLREVVMEEPRMLRVQSPVYVLGDLHGNFRDLVCFEKLLWRMGPVLTPSNFLFLGDY 711

Query: 437 VDRGKQSLE 463
           VDRG+  +E
Sbjct: 712 VDRGENGVE 720


>SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +1

Query: 541 SINRIYGFYDECKRR--YNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQI 714
           S+  +  F  E  RR    I+L +  T  F+  P +A    K         P++ +MEQI
Sbjct: 4   SVLGVVNFRREWARRKFLLIQLQQASTAIFDYAPYSACAQRKTLA---NFPPNM-SMEQI 59

Query: 715 RRIMRPTDVPDQGLLC 762
           RRIMRPTDVPD GLLC
Sbjct: 60  RRIMRPTDVPDTGLLC 75



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/20 (75%), Positives = 15/20 (75%)
 Frame = +3

Query: 750 GFALHLLWSDPDKDTAGWGE 809
           G    LLWSDPDKDT GWGE
Sbjct: 72  GLLCDLLWSDPDKDTNGWGE 91


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 395 GFP-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENSF 514
           G P PE+ Y+F GD VDRG +S+E   +L A+ I YP   +
Sbjct: 2   GLPSPENPYIFNGDLVDRGPRSIEICIILFAFTILYPNGVY 42



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
 Frame = +1

Query: 511 FLLRGNHECASIN-RIYGFYDECKRRYN---IKLWKTFTDCFNCLPVAAIVDEKIFCCHG 678
           ++ RGNHE   +N RI       K +Y     ++ +TF      LP+A IV+ KIF  HG
Sbjct: 42  YINRGNHEDHIMNLRIIVTKAGGKDQYKDSRSEIIRTFRKYLGWLPLATIVNNKIFVAHG 101

Query: 679 GLS--PDLQAMEQIRR 720
           G+S   DL  +E+I R
Sbjct: 102 GISNITDLDIIERIDR 117


>SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)
          Length = 250

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 338 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKY 499
           + GDIHG    L +LFE          +FLGDYVD   +S  TI  L+    K+
Sbjct: 7   VFGDIHGGLRALQQLFERAEITINDKLIFLGDYVDGWSESAATIQFLIEIAEKH 60


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 750 GFALHLLWSDPDKDTAGWGE 809
           G    LLWSDPD+D  GWG+
Sbjct: 124 GLVCDLLWSDPDEDITGWGD 143


>SB_42654| Best HMM Match : Tfb4 (HMM E-Value=0.0028)
          Length = 128

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 551 LLMLAHSWFPRKRKNSRD-I*SCRRGAGILFPTTACHGPHSLRGRDSWTPEGSHHTQTTL 375
           L++L +S+   K  N    + +   G+  L+P  +C G  SL  +DS   + S    T L
Sbjct: 42  LMVLCNSYLLLKHNNLLAFVAASTNGSKFLYPKASCEGIQSLPSQDSKYEKFSEFNDTVL 101

Query: 374 R 372
           R
Sbjct: 102 R 102


>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +3

Query: 387 SMVASLRSPTISSSETMWTVASSRWKQYACSSPTRLNIPRILSFTRKP 530
           S+ AS  +PT  S+ ++ ++ S+   + + +SP+ L+   +LSF+ +P
Sbjct: 201 SLEASSNTPTALSATSLMSLPSTSSLKASSNSPSALSTTSLLSFSIQP 248


>SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 429 ETMWTVASSRWKQYACSSPTRLNIPRILSFTRKP 530
           E + T  + RWK +    P R+ +PR L   R+P
Sbjct: 296 EPLPTEINQRWKAWGSRLPERIEVPRSLPDHREP 329


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 798 RPCPCRGRTRASAEQTLVGN 739
           RPC CRGR  A  + TLV N
Sbjct: 275 RPCQCRGRCPALPDGTLVEN 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,010,587
Number of Sequences: 59808
Number of extensions: 591416
Number of successful extensions: 1686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)