Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1308X
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A5J4 Cluster: Putative tRNA/rRNA methyltransferase; n...    32   5.0  
UniRef50_Q8IDG1 Cluster: Putative uncharacterized protein PF13_0...    32   5.0  
UniRef50_A4AV45 Cluster: Penicillin-binding protein, putative; n...    31   6.6  
UniRef50_A0C663 Cluster: Chromosome undetermined scaffold_151, w...    31   8.7  

>UniRef50_Q4A5J4 Cluster: Putative tRNA/rRNA methyltransferase; n=2;
           Mycoplasma synoviae 53|Rep: Putative tRNA/rRNA
           methyltransferase - Mycoplasma synoviae (strain 53)
          Length = 239

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -3

Query: 281 KSSMAPLG*VFKIDNSQSRKYKKMKQFFFL-GFKILLALKKGHDDVITTQSQNFLLH 114
           KS   PL  + +    Q++KY+K KQ F L GF ++   KK + +VIT +S   L++
Sbjct: 4   KSKQNPL--IKEYKKLQNKKYRKEKQQFLLEGFNLISEAKK-YTNVITLESSKDLIY 57


>UniRef50_Q8IDG1 Cluster: Putative uncharacterized protein
           PF13_0283; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0283 - Plasmodium
           falciparum (isolate 3D7)
          Length = 595

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 329 YSGMFEVSWH-ISLLENKSSMAPLG*VFKIDNSQSRKYKKMKQFFF 195
           YS +F  S H   L +N S++      + +DN++ +K KK K+FFF
Sbjct: 348 YSPLFHRSIHKFELKKNLSNIRNWEYFYGVDNNKKKKKKKKKKFFF 393


>UniRef50_A4AV45 Cluster: Penicillin-binding protein, putative; n=1;
           Flavobacteriales bacterium HTCC2170|Rep:
           Penicillin-binding protein, putative - Flavobacteriales
           bacterium HTCC2170
          Length = 500

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 138 TKSKFPTPYIGHDVINTIRYGL-W*L-KPNQNKKKSSHN 28
           +K  F TPY+  DV  T  YG  W + +  QN K  +HN
Sbjct: 285 SKVLFETPYVAEDVAGTSHYGYGWAIFRSKQNTKTVTHN 323


>UniRef50_A0C663 Cluster: Chromosome undetermined scaffold_151,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_151,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 522

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -3

Query: 248 KIDNSQSRKYKKMKQFFFLGFKILLALKKGHDDVITTQSQNF 123
           K++N+Q ++   +K+F F G+K L  LK+  D +     Q++
Sbjct: 240 KMENNQQQQQNALKKFDFNGYKELSRLKRMKDAIFVEYQQSY 281


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,350,372
Number of Sequences: 1657284
Number of extensions: 6583494
Number of successful extensions: 11290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11288
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)