Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1308X
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   3.4  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    24   7.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    24   7.8  

>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 250 NTQPKGAILDLFSSNEICHDTSNIP 324
           N+ PK +  D F + EI H  SN P
Sbjct: 84  NSTPKSSNYDPFENLEILHQLSNTP 108


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 248 KIDNSQSRKYKKMKQFFFLGF 186
           KI + +SR Y K   +F LGF
Sbjct: 234 KISSGESRVYSKGTNYFCLGF 254


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 378 YSPYKTISCH 349
           Y PY+T+SCH
Sbjct: 305 YIPYRTVSCH 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,380
Number of Sequences: 5004
Number of extensions: 31497
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)