Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1308X
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1125 + 30576951-30577010,30577163-30577285,30577393-305775...    27   4.3  
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    27   4.3  
06_03_1147 - 28006982-28007214,28007604-28007617,28008065-280081...    26   9.9  

>03_05_1125 +
           30576951-30577010,30577163-30577285,30577393-30577552,
           30577635-30577702,30577928-30578473,30578725-30579312,
           30579392-30579604,30580227-30580388
          Length = 639

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 147 HNDTKSKFPTPYIGHDVINTIRYGLW*LKPNQNKKKSSHNFRE 19
           + D K      Y   DV  +I+Y +W   PN NKK  +  +RE
Sbjct: 459 YKDAKFFVIKSYSEDDVHKSIKYNVWASTPNGNKKLDA-GYRE 500


>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 147 HNDTKSKFPTPYIGHDVINTIRYGLW*LKPNQNKK 43
           H D K      Y   DV  +I+Y +W   PN NK+
Sbjct: 299 HPDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKR 333


>06_03_1147 -
           28006982-28007214,28007604-28007617,28008065-28008156,
           28008267-28008364,28008509-28008566
          Length = 164

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 306 RHFKHTGVFIDDSCDDMK*FCRGYKKLS*GT 398
           RH  H GV   DSC       RG ++LS G+
Sbjct: 36  RHVSHIGVGTSDSCPSWMSEFRGLEELSAGS 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,053,502
Number of Sequences: 37544
Number of extensions: 162102
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)