Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1308X
         (406 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   1.8  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    24   2.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    22   7.4  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    22   9.8  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 150  RHNDTKSKFPTPYIGHDVINTIR 82
            R+ DTKS+ P    GH+  N I+
Sbjct: 980  RNGDTKSRSPVVADGHNSTNVIK 1002


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 144  NDTKSKFPTPYIGHDVINTIRYGL 73
            ND   KF  P+  H +    +YG+
Sbjct: 950  NDNNPKFRKPFYKHSIAENSQYGV 973


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 306 RHFKHTGVFIDD 341
           RH K+ GV IDD
Sbjct: 703 RHLKYLGVIIDD 714


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 306 RHFKHTGVFIDD 341
           RH K+ G+ IDD
Sbjct: 712 RHLKYLGIMIDD 723


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,740
Number of Sequences: 2352
Number of extensions: 7624
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32494788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)