Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1308X
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical ... 28 2.9
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 27 5.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 27 5.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 27 5.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 27 5.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 27 5.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 27 5.1
AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical ... 27 6.8
AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine re... 27 6.8
Z68116-11|CAA92176.1| 317|Caenorhabditis elegans Hypothetical p... 26 9.0
Z68114-12|CAA92163.1| 317|Caenorhabditis elegans Hypothetical p... 26 9.0
>AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical
protein C29G2.4 protein.
Length = 354
Score = 27.9 bits (59), Expect = 2.9
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Frame = -3
Query: 359 FHVIAGVIYEYSGMFEVSWHISLLENKS---SMAPLG*VFKIDNSQSRKYKKMKQFFFLG 189
FH +IYEY F W + L+ + S S LG V+ N R +K F
Sbjct: 253 FHASTSIIYEYVQFFPAPWWLILIAHISWQFSSGCLGIVYLTLNRTIRN-SVVKMIFPKK 311
Query: 188 FKILLALKKGHDDVITTQSQNFLLHT*ATMLLILLDMDS 72
++ G D+ + + L T + + ++ DS
Sbjct: 312 MRLYFGWYIGTDEHVALEQAGNTLKTAGNAVGVGINFDS 350
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 224 KYKKMKQFFFLGFKILLALKKGHDDVITTQSQ 129
+ KK+ + + L F+ L L+K HDD+ ++ Q
Sbjct: 176 RLKKLYEVYVLNFRNLSYLRKVHDDLARSERQ 207
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 224 KYKKMKQFFFLGFKILLALKKGHDDVITTQSQ 129
+ KK+ + + L F+ L L+K HDD+ ++ Q
Sbjct: 238 RLKKLYEVYVLNFRNLSYLRKVHDDLARSERQ 269
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 224 KYKKMKQFFFLGFKILLALKKGHDDVITTQSQ 129
+ KK+ + + L F+ L L+K HDD+ ++ Q
Sbjct: 249 RLKKLYEVYVLNFRNLSYLRKVHDDLARSERQ 280
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 224 KYKKMKQFFFLGFKILLALKKGHDDVITTQSQ 129
+ KK+ + + L F+ L L+K HDD+ ++ Q
Sbjct: 176 RLKKLYEVYVLNFRNLSYLRKVHDDLARSERQ 207
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 224 KYKKMKQFFFLGFKILLALKKGHDDVITTQSQ 129
+ KK+ + + L F+ L L+K HDD+ ++ Q
Sbjct: 238 RLKKLYEVYVLNFRNLSYLRKVHDDLARSERQ 269
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 224 KYKKMKQFFFLGFKILLALKKGHDDVITTQSQ 129
+ KK+ + + L F+ L L+K HDD+ ++ Q
Sbjct: 249 RLKKLYEVYVLNFRNLSYLRKVHDDLARSERQ 280
>AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical
protein Y39E4B.10 protein.
Length = 581
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 196 KKNCFIFLYFLD*ELSILNTQPKGAILDLFSSNEI 300
KKN F FL F + E SI + K FS N+I
Sbjct: 340 KKNLFFFLIFNNLEKSIFSNFKKSNTFFQFSKNKI 374
>AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine
receptor, class w protein95 protein.
Length = 363
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 383 FLIAPTKLFH--VIAGVIYEYSGMFEVSWHISLLENKSSM 270
FLIA K H +I ++ G+F S+H+ +L S +
Sbjct: 29 FLIAVEKFVHPSIIINIVISSIGIFTTSFHLFVLSRNSML 68
>Z68116-11|CAA92176.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.8 protein.
Length = 317
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 133 LCVVMTSS*PFLSANNILNPRKKNCFIFLY 222
L V +T+ + +A ++ +KKNCF+ L+
Sbjct: 103 LTVFLTTFMKYQAARHVRPSKKKNCFVILF 132
>Z68114-12|CAA92163.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.8 protein.
Length = 317
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 133 LCVVMTSS*PFLSANNILNPRKKNCFIFLY 222
L V +T+ + +A ++ +KKNCF+ L+
Sbjct: 103 LTVFLTTFMKYQAARHVRPSKKKNCFVILF 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,598,649
Number of Sequences: 27780
Number of extensions: 169626
Number of successful extensions: 267
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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