Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1308X
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   9.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 66  LKPNQNKKKSSHNFRET*ISLI 1
           L PNQN     HNF    IS I
Sbjct: 354 LSPNQNVYGDLHNFGHVAISYI 375


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 293 LLENKSSMAPLG*VFKIDNSQSRKY 219
           L E   ++AP G    IDN +  KY
Sbjct: 356 LYEETYALAPAGCDLTIDNLRKAKY 380


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 235 LNLENTRK*NNFFFWDLKYC*HSKKVTMTS 146
           L+L+N    NN++ W      + K+V  T+
Sbjct: 134 LSLKNIEPYNNYYIWHPGKIVNGKRVPPTN 163


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 235 LNLENTRK*NNFFFWDLKYC*HSKKVTMTS 146
           L+L+N    NN++ W      + K+V  T+
Sbjct: 134 LSLKNIEPYNNYYIWHPGKIVNGKRVPPTN 163


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 238 LSILNTQPKGAILDLFSSNE 297
           + I+   PKG+ILD  S ++
Sbjct: 234 IKIIAVDPKGSILDPSSDSQ 253


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 70  PESISNSINNIVAYVWSRKF*LCVVMTSS*PF 165
           PE I N  ++I A  WS    +  ++T + PF
Sbjct: 534 PEVILNKGHDISADYWSLGVLMFELLTGTPPF 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,158
Number of Sequences: 438
Number of extensions: 2022
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)