BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1307 (731 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_A0BF22 Cluster: Chromosome undetermined scaffold_103, w... 33 5.5 UniRef50_Q6YR23 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2 UniRef50_Q8XN80 Cluster: Sensor protein; n=4; Bacteria|Rep: Sens... 33 9.5 >UniRef50_A0BF22 Cluster: Chromosome undetermined scaffold_103, whole genome shotgun sequence; n=1; Paramecium tetraurelia|Rep: Chromosome undetermined scaffold_103, whole genome shotgun sequence - Paramecium tetraurelia Length = 647 Score = 33.5 bits (73), Expect = 5.5 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -2 Query: 601 LNQEKRVKFNVANMAKLICISNFAFNDIYQFVAEIKFTSYDVTNQSYY 458 +NQ+ + KF +N+ KLI S F +++ ++ KF N+S Y Sbjct: 547 INQDSQYKFRTSNLPKLIVPSPFESSEMLNYLERAKFPKKSDLNKSAY 594 >UniRef50_Q6YR23 Cluster: Putative uncharacterized protein; n=1; Onion yellows phytoplasma|Rep: Putative uncharacterized protein - Onion yellows phytoplasma Length = 160 Score = 33.1 bits (72), Expect = 7.2 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +2 Query: 53 LLLIMFANFFTCYISVF*FNFVNSSQNISKLKRKEKTKLPSFDHIYEKNTGD-IIFMHIN 229 +LL+ ++F S F N+ ++ K+K K++T + +I KNT +IF+H N Sbjct: 9 ILLLNINSYFIKAHSTFKLNY--QIKSTFKIKVKKETLNNTIHNIKVKNTNKALIFIHKN 66 Query: 230 SIPNVFRNLHF-*CEKANFNT*YVSSVLNC 316 PN ++ + F N S+LNC Sbjct: 67 IYPNYYKKVSFHKTINQNKGELMSKSILNC 96 >UniRef50_Q8XN80 Cluster: Sensor protein; n=4; Bacteria|Rep: Sensor protein - Clostridium perfringens Length = 743 Score = 32.7 bits (71), Expect = 9.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 330 NAIGWVFDCITEIKVQIVHYCLFSDYSVLKYGYFNMISNYKL 455 N WVF IT I + I+ CL Y ++K + I++Y L Sbjct: 21 NKTKWVFTIITLILIGIISICLLLSYPIIKKNAPSYITSYSL 62 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 605,410,487 Number of Sequences: 1657284 Number of extensions: 11087833 Number of successful extensions: 21668 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 20728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 21658 length of database: 575,637,011 effective HSP length: 99 effective length of database: 411,565,895 effective search space used: 59265488880 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -