Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1307
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BF22 Cluster: Chromosome undetermined scaffold_103, w...    33   5.5  
UniRef50_Q6YR23 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_Q8XN80 Cluster: Sensor protein; n=4; Bacteria|Rep: Sens...    33   9.5  

>UniRef50_A0BF22 Cluster: Chromosome undetermined scaffold_103,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_103,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 647

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 601 LNQEKRVKFNVANMAKLICISNFAFNDIYQFVAEIKFTSYDVTNQSYY 458
           +NQ+ + KF  +N+ KLI  S F  +++  ++   KF      N+S Y
Sbjct: 547 INQDSQYKFRTSNLPKLIVPSPFESSEMLNYLERAKFPKKSDLNKSAY 594


>UniRef50_Q6YR23 Cluster: Putative uncharacterized protein; n=1;
           Onion yellows phytoplasma|Rep: Putative uncharacterized
           protein - Onion yellows phytoplasma
          Length = 160

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +2

Query: 53  LLLIMFANFFTCYISVF*FNFVNSSQNISKLKRKEKTKLPSFDHIYEKNTGD-IIFMHIN 229
           +LL+   ++F    S F  N+    ++  K+K K++T   +  +I  KNT   +IF+H N
Sbjct: 9   ILLLNINSYFIKAHSTFKLNY--QIKSTFKIKVKKETLNNTIHNIKVKNTNKALIFIHKN 66

Query: 230 SIPNVFRNLHF-*CEKANFNT*YVSSVLNC 316
             PN ++ + F      N       S+LNC
Sbjct: 67  IYPNYYKKVSFHKTINQNKGELMSKSILNC 96


>UniRef50_Q8XN80 Cluster: Sensor protein; n=4; Bacteria|Rep: Sensor
           protein - Clostridium perfringens
          Length = 743

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 330 NAIGWVFDCITEIKVQIVHYCLFSDYSVLKYGYFNMISNYKL 455
           N   WVF  IT I + I+  CL   Y ++K    + I++Y L
Sbjct: 21  NKTKWVFTIITLILIGIISICLLLSYPIIKKNAPSYITSYSL 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,410,487
Number of Sequences: 1657284
Number of extensions: 11087833
Number of successful extensions: 21668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21658
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)