Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1307
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical pr...    32   0.36 
AL117207-3|CAB60391.1|  331|Caenorhabditis elegans Hypothetical ...    32   0.36 
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    29   3.4  

>Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.1 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 27  TKRLNM*KIYY*SCLQIFLPVTYLSFNLILSIVVKTLVN*KEKKKLNYPLLTIFTRKIL- 203
           T RL   + +Y  CLQ+F+PV  L+F +I  +V+ +      +   N  L  I T  IL 
Sbjct: 232 TNRLQK-QFFYALCLQVFIPVFVLTFPMIY-VVLTSWFEYYNQAATNTALTIISTHGILS 289

Query: 204 VI*YLCILTQF-QMFLEIYTFNAKR 275
            +  L + T + +   EI  FN K+
Sbjct: 290 TLTMLIVHTPYRKAATEILCFNCKK 314


>AL117207-3|CAB60391.1|  331|Caenorhabditis elegans Hypothetical
           protein Y60A3A.3 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 27  TKRLNM*KIYY*SCLQIFLPVTYLSFNLILSIVVKTLVN*KEKKKLNYPLLTIFTRKIL- 203
           T RL   + ++  CLQ+F+P+  L+F +I  I++  ++    +   N  + TI    +L 
Sbjct: 231 TSRLQK-QFFFAMCLQVFIPIFVLAFPVIY-IIMSIVLGYFNQAASNLAICTIAFHGVLS 288

Query: 204 VI*YLCILTQF-QMFLEIYTFNAKR 275
            +  L + T + Q  LEI+  ++KR
Sbjct: 289 TVTMLIVHTPYRQATLEIFHLSSKR 313


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 27  TKRLNM*KIYY*SCLQIFLPVTYLSFNLILSIVVKTLVN*KEKKKLNYPLLTIFTRKIL 203
           T RL   + ++  C+Q+F+P+  LSF  +L IV+    N   +   N+ L  I    IL
Sbjct: 232 TNRLQK-QFFFALCIQVFIPIFVLSFP-VLYIVLAIWFNYYNQAATNFALFGIALHGIL 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,598
Number of Sequences: 27780
Number of extensions: 291637
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)