Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1306
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    33   0.043
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.30 
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    29   0.93 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   6.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   6.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.7  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 22/55 (40%), Positives = 26/55 (47%)
 Frame = -3

Query: 548 ANKSVFIKKVAEINRSRVSLPLSLISSFAHSILVFFDRPLPPLPCTTISIHLYIN 384
           A + V    V E+ +SR  LPL  I S   SIL FF R  P  P     +  YIN
Sbjct: 308 AIQEVLWSHVVEVIQSRSGLPLDCIVSILSSILNFFLRCYPYKPQYADRVFQYIN 362


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +1

Query: 13  SDWNCKFVHYYDCILYFYNHKFRQDYTIKNINKDKQYFIYSQFDNRRQEQ 162
           ++W C  +  +   ++     FR+ Y + NI   K   +YS  ++ +Q +
Sbjct: 187 NNWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 442 KKTRMECANDDMRERGSETRDLLISATFFINTLLLASDV 558
           K TR+ C    +RE G   RD+ I   FF+NTL+  SD+
Sbjct: 376 KLTRLGCGRL-VRELGPHWRDI-IDWAFFMNTLISNSDI 412


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 641 SLISIPNFELIRRFEGGQNQAQRFRCIHTSEANKSVFIKKV-AEIN--RSRVSLPL 483
           SL SIP F   +R+  GQ+ A     +  S     +F +K+  E+N  R R+ + +
Sbjct: 309 SLFSIPKFFKKKRYSLGQDDANPMELLQLSFQELCIFNEKLEQELNFLRERIDVEM 364


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 504 ITRFTPSLSHIIIRTLHPRLFRSTS--SPSTLHYHFH 400
           +T+ + SLS++  + L  +LFRS S  SPS L    H
Sbjct: 113 LTKSSKSLSNVSNKPLGDQLFRSNSLMSPSLLKKELH 149


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 55  LYFYNHKFRQDYTIKNINKDKQYFIYSQFDNRRQEQ 162
           L +YN   RQ     N+N +K   I+S  +   +EQ
Sbjct: 226 LSYYNGSVRQASMNNNVNNNKSKDIWSSSNTEEREQ 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,240
Number of Sequences: 5004
Number of extensions: 54434
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)