Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1306
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    29   3.9  
08_01_0118 + 947394-947885,948709-948810,948914-949219,949557-94...    29   5.2  

>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 524 KVAEINRSRVSLPLSLISSFAHSILVFFDRPLPPLPCTTISIH 396
           K+   +   V  P    SSF      FF R L PL CT +++H
Sbjct: 524 KLKASDADTVQFPEQASSSFLAYYCYFFPRILFPLLCTVVNVH 566


>08_01_0118 +
           947394-947885,948709-948810,948914-949219,949557-949616
          Length = 319

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 483 LSHIIIRTLHPRLFRSTSSPS---TLHYHFH 400
           L H +   LHPR   S+SSPS    LH H H
Sbjct: 10  LHHHLPNPLHPRHLSSSSSPSPPPPLHLHLH 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,281,738
Number of Sequences: 37544
Number of extensions: 285414
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)