Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1306
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z36752-1|CAA85323.2|  150|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    28   6.1  
Z75543-13|CAI79192.1|  281|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z75543-12|CAA99874.4|  280|Caenorhabditis elegans Hypothetical p...    28   8.1  
AY728061-1|AAU43722.1|  281|Caenorhabditis elegans cadmium-induc...    28   8.1  

>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 37  HYYDCILYFYNHKFRQDYTIKNINKDKQYF 126
           H +D ILYFYN K  +D T   + K  Q F
Sbjct: 492 HIWDVILYFYNLKTGRDTTDAPVRKLSQSF 521


>Z36752-1|CAA85323.2|  150|Caenorhabditis elegans Hypothetical
           protein F35H8.1 protein.
          Length = 150

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = +1

Query: 13  SDWNCKFVHYYDCILYFYNHKFRQ--------DYTIKNINKDKQYFI 129
           +DW     H+ D  LYF  H + Q        ++  K I KD++Y +
Sbjct: 89  TDWKVTNAHFNDNTLYFNIHNYNQHLAIYPDLEFEAKKIGKDERYIL 135


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 657 IDLSSVLNKYTKFRVNPTF*RGSKSSSKIPLHTY 556
           +DLS ++NK T+  +NP F + +K  S +   T+
Sbjct: 150 VDLSQLVNKATRMLLNPIFTKKTKKMSNLEQLTH 183


>Z75543-13|CAI79192.1|  281|Caenorhabditis elegans Hypothetical
           protein K01D12.13b protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 248 VSICIILKKY*HCALLLYILYKCGKFHTPPS 340
           +SIC   K     A  +Y +YK  KF TPP+
Sbjct: 1   MSICAHSKLIFASAAAIYAVYKINKFFTPPT 31


>Z75543-12|CAA99874.4|  280|Caenorhabditis elegans Hypothetical
           protein K01D12.13a protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 248 VSICIILKKY*HCALLLYILYKCGKFHTPPS 340
           +SIC   K     A  +Y +YK  KF TPP+
Sbjct: 1   MSICAHSKLIFASAAAIYAVYKINKFFTPPT 31


>AY728061-1|AAU43722.1|  281|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-7 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 248 VSICIILKKY*HCALLLYILYKCGKFHTPPS 340
           +SIC   K     A  +Y +YK  KF TPP+
Sbjct: 1   MSICAHSKLIFASAAAIYAVYKINKFFTPPT 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,846
Number of Sequences: 27780
Number of extensions: 299603
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)