Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0AMP5 Cluster: Vault protein inter-alpha-trypsin domai...    35   1.2  
UniRef50_Q84AX5 Cluster: ATP synthase B chain; n=33; Buchnera ap...    32   8.1  
UniRef50_Q9C170 Cluster: Ste12-like transcription factor; n=8; P...    32   8.1  

>UniRef50_Q0AMP5 Cluster: Vault protein inter-alpha-trypsin domain
           protein precursor; n=1; Maricaulis maris MCS10|Rep:
           Vault protein inter-alpha-trypsin domain protein
           precursor - Maricaulis maris (strain MCS10)
          Length = 740

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -1

Query: 367 DRQRLGAKETTSRSCIPEHDHANRTYELFRATGQRTSQASSHRPDLVLIQNSN 209
           DR R+   +      I E   A RTYE  RA GQR S     RP++     +N
Sbjct: 121 DRLRMQVGDRFIEGEIQERQAARRTYEAARANGQRASLVEQERPNMFTTSVAN 173


>UniRef50_Q84AX5 Cluster: ATP synthase B chain; n=33; Buchnera
           aphidicola|Rep: ATP synthase B chain - Buchnera
           aphidicola
          Length = 156

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 328 FCLLFLWHQVFVYQEKSANNYKITLNFID*NVHTFSLHSQSIK 456
           FC+ ++W  + +  E+   N   +LNFI        +H + +K
Sbjct: 20  FCMKYIWPPILITIERRQKNISDSLNFIKKEKENLKIHQEKVK 62


>UniRef50_Q9C170 Cluster: Ste12-like transcription factor; n=8;
           Pezizomycotina|Rep: Ste12-like transcription factor -
           Neurospora crassa
          Length = 722

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 70  SCPLPRCYRVYIRI*FGGSLKRDVSFHYC*ITQRLSIXCNKTALNVSSSSELGQ-----D 234
           SCP+P C RV+ R+     LKR V  H    TQ     C+      S S  L Q     D
Sbjct: 592 SCPIPSCGRVFKRL---EHLKRHVRTH----TQERPYVCSYCQKAFSRSDNLAQHKRTHD 644

Query: 235 RGDGN 249
           RGDG+
Sbjct: 645 RGDGS 649


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,646,248
Number of Sequences: 1657284
Number of extensions: 8898596
Number of successful extensions: 19425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19422
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)