Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.3  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 358 RLGAKETTSRSCIPEHDHANRTYELFRATGQRTSQASSHR 239
           +LGA    SR+  P+HD   R  E F +     +  +S R
Sbjct: 204 QLGAAVDESRTPRPKHDGRGRIVERFTSDRVHAALVTSPR 243


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 242 MGT-CLACSLTGCTKKFIRSICVVV 313
           +GT C+   +TG   KF+R I  VV
Sbjct: 750 LGTGCVRIKITGVWLKFLRVILSVV 774


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 281 SCNRSTNKPGKFPSPRSCP 225
           SCNR     G +P  + CP
Sbjct: 169 SCNRYWQCQGGYPRLQRCP 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,093
Number of Sequences: 336
Number of extensions: 2498
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)