Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.9  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   3.4  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   3.4  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.9  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   5.9  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 524  HYVCMSVKVQHSYIGHLTM*SRLLIDCECKLNV 426
            HY+ + V +   YI H+T+ S LL+  E ++ +
Sbjct: 1902 HYMVVDVNLGEDYIKHITLRSPLLLINETQMEI 1934


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 379 RSFPDRQRLGAKETTSRSCIPEHDHANRTYELFRATG--QRTSQA 251
           +  PD   +   ETT +    EH    R  ELF+ T   Q+ S+A
Sbjct: 208 KPIPDYDFMKGLETTLQELYVEHQSKKRRLELFQLTNNHQKNSEA 252


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 222 IRTRSGRWELAWLVR*PVARKSSYVRFAWS 311
           + T   RWELA +V  P   ++ +V F +S
Sbjct: 223 LNTSDSRWELASVVNDPPPARAGHVAFTFS 252


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 358 RLGAKETTSRSCIPEHDHANRTYELFRATGQRTSQASSHRPDLVLIQNS 212
           +L  K+TT  S  P+  HA  T E    T  R++  S H  +L  I NS
Sbjct: 400 KLRKKQTTKVSGTPKSKHAGSTQEWHSHTTPRST--SKHENNLNNITNS 446


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 390 VIVSALFLIDKDLVPKKQQAEAVFLNTTTQIERMNFFVQPV 268
           +I+  L L+D++L P          N ++Q  R+N  V+P+
Sbjct: 286 MIIERLGLLDENLAPIVDTNNVELTNASSQDRRINEGVRPI 326


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 232 DRGDGNLPGLFVDRLHEKVHTFDLRGRVQEYSFCLL 339
           + GD  + G FV + H+ V  FD+      Y+F  L
Sbjct: 341 ENGDNTITGAFVIKGHDYVPAFDVAPDWGSYTFTKL 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,680
Number of Sequences: 5004
Number of extensions: 39882
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)